Information for 3-TGTGGTTA (Motif 4)


Reverse Opposite:

p-value:1e-32
log p-value:-7.537e+01
Information Content per bp:1.633
Number of Target Sequences with motif1585.0
Percentage of Target Sequences with motif3.50%
Number of Background Sequences with motif987.2
Percentage of Background Sequences with motif2.18%
Average Position of motif in Targets12.9 +/- 5.3bp
Average Position of motif in Background12.8 +/- 6.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.02
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer

Match Rank:1
Score:0.96
Offset:-1
Orientation:reverse strand
Alignment:-TGTGGTTA-
CTGTGGTTTN

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.94
Offset:-2
Orientation:forward strand
Alignment:--TGTGGTTA
GCTGTGGTTT

RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer

Match Rank:3
Score:0.94
Offset:-2
Orientation:reverse strand
Alignment:--TGTGGTTA
NNTGTGGTTT

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.94
Offset:-3
Orientation:reverse strand
Alignment:---TGTGGTTA-
NNHTGTGGTTWN

RUNX1/MA0002.2/Jaspar

Match Rank:5
Score:0.92
Offset:-3
Orientation:forward strand
Alignment:---TGTGGTTA
GTCTGTGGTTT

RUNX2/MA0511.2/Jaspar

Match Rank:6
Score:0.91
Offset:-1
Orientation:reverse strand
Alignment:-TGTGGTTA
TTGCGGTTT

RUNX3/MA0684.1/Jaspar

Match Rank:7
Score:0.90
Offset:-2
Orientation:reverse strand
Alignment:--TGTGGTTA
TTTGCGGTTT

Bgb::run/MA0242.1/Jaspar

Match Rank:8
Score:0.88
Offset:-1
Orientation:reverse strand
Alignment:-TGTGGTTA
TTGCGGTTA

Run/dmmpmm(Papatsenko)/fly

Match Rank:9
Score:0.77
Offset:0
Orientation:forward strand
Alignment:TGTGGTTA
GGCGGTG-

MET31(MacIsaac)/Yeast

Match Rank:10
Score:0.77
Offset:-2
Orientation:forward strand
Alignment:--TGTGGTTA
GGTGTGGC--