Information for 2-CCACCAGGGGGCGC (Motif 3)


Reverse Opposite:

p-value:1e-34
log p-value:-8.020e+01
Information Content per bp:1.698
Number of Target Sequences with motif343.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif92.3
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets12.8 +/- 3.7bp
Average Position of motif in Background12.7 +/- 4.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.97
Offset:-1
Orientation:reverse strand
Alignment:-CCACCAGGGGGCGC-----
GCCASCAGGGGGCGCYVNNG

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---CCACCAGGGGGCGC--
TGGCCACCAGGGGGCGCTA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.91
Offset:-3
Orientation:reverse strand
Alignment:---CCACCAGGGGGCGC---
TGGCCACCAGGTGGCACTNT

CTCF/MA0531.1/Jaspar

Match Rank:4
Score:0.81
Offset:0
Orientation:forward strand
Alignment:CCACCAGGGGGCGC-
CCGCTAGATGGCGCC

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:CCACCAGGGGGCGC----
-NNNAAGGGGGCGGGNNN

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:6
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-CCACCAGGGGGCGC
CACAGCAGGGGG---

ZIC4/MA0751.1/Jaspar

Match Rank:7
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CCACCAGGGGGCGC
NCNCAGCGGGGGGTC-

btd/MA0443.1/Jaspar

Match Rank:8
Score:0.67
Offset:5
Orientation:forward strand
Alignment:CCACCAGGGGGCGC-
-----AGGGGGCGGA

MSN4/Literature(Harbison)/Yeast

Match Rank:9
Score:0.66
Offset:4
Orientation:forward strand
Alignment:CCACCAGGGGGCGC
----AAGGGGN---

MSN4/MA0342.1/Jaspar

Match Rank:10
Score:0.65
Offset:5
Orientation:forward strand
Alignment:CCACCAGGGGGCGC
-----AGGGG----