Information for 5-CGCCTGGCTAATTT (Motif 10)


Reverse Opposite:

p-value:1e-5
log p-value:-1.357e+01
Information Content per bp:1.874
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif0.06%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets14.6 +/- 5.2bp
Average Position of motif in Background14.1 +/- 4.2bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:1
Score:0.60
Offset:0
Orientation:forward strand
Alignment:CGCCTGGCTAATTT-
ACCGTGACTAATTNN

RAV1(2)(AP2/EREBP)/Arabidopsis thaliana/AthaMap

Match Rank:2
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CGCCTGGCTAATTT
ATCACCTGAGGC----

RAV1(var.2)/MA0583.1/Jaspar

Match Rank:3
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CGCCTGGCTAATTT
ATCACCTGAGGC----

PhdP/dmmpmm(Noyes_hd)/fly

Match Rank:4
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CGCCTGGCTAATTT-
-----NNTTAATTAN

Dlx1/MA0879.1/Jaspar

Match Rank:5
Score:0.56
Offset:6
Orientation:reverse strand
Alignment:CGCCTGGCTAATTT--
------NNTAATTANN

tll/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.56
Offset:7
Orientation:forward strand
Alignment:CGCCTGGCTAATTT
-------TTAATTT

PHDP/MA0457.1/Jaspar

Match Rank:7
Score:0.56
Offset:7
Orientation:forward strand
Alignment:CGCCTGGCTAATTT
-------TTAATTA

YAP1(MacIsaac)/Yeast

Match Rank:8
Score:0.55
Offset:1
Orientation:forward strand
Alignment:CGCCTGGCTAATTT
-TGCTGACTAAT--

YAP1/YAP1_H2O2Lo/3-YAP1(Harbison)/Yeast

Match Rank:9
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:CGCCTGGCTAATTT
--GCTGACTAA---

PL0008.1_hlh-29/Jaspar

Match Rank:10
Score:0.54
Offset:-6
Orientation:forward strand
Alignment:------CGCCTGGCTAATTT
CTGCCACGCGTGGCCAA---