| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File | |
| 1 | | Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer | 1e-5 | -1.214e+01 | 0.0021 | 163.0 | 0.36% | 92.7 | 0.21% | motif file (matrix) | |
| 2 | | Unknown4/Arabidopsis-Promoters/Homer | 1e-2 | -5.815e+00 | 0.5770 | 407.0 | 0.90% | 331.4 | 0.73% | motif file (matrix) | |
| 3 | | TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-2 | -4.954e+00 | 0.9103 | 167.0 | 0.37% | 124.3 | 0.28% | motif file (matrix) | |
| 4 | | Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer | 1e-2 | -4.930e+00 | 0.9103 | 80.0 | 0.18% | 51.9 | 0.11% | motif file (matrix) |