Information for 2-GAGACTGAGGCT (Motif 9)


Reverse Opposite:

p-value:1e-6
log p-value:-1.602e+01
Information Content per bp:1.870
Number of Target Sequences with motif27.0
Percentage of Target Sequences with motif0.06%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets13.0 +/- 3.7bp
Average Position of motif in Background11.3 +/- 5.0bp
Strand Bias (log2 ratio + to - strand density)0.8
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Initiator/Drosophila-Promoters/Homer

Match Rank:1
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:GAGACTGAGGCT
-CRACTGAN---

TFAP2B(var.2)/MA0812.1/Jaspar

Match Rank:2
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:GAGACTGAGGCT
-TGCCTGAGGCN

TFAP2C(var.2)/MA0814.1/Jaspar

Match Rank:3
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GAGACTGAGGCT
-AGCCTCAGGCA

MET32(MacIsaac)/Yeast

Match Rank:4
Score:0.65
Offset:1
Orientation:forward strand
Alignment:GAGACTGAGGCT
-AAACTGTGGC-

MET31/Literature(Harbison)/Yeast

Match Rank:5
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAGACTGAGGCT
-AAACTGTGG--

MET32/Literature(Harbison)/Yeast

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:GAGACTGAGGCT
-AAACTGTGG--

TFAP2A/MA0003.3/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GAGACTGAGGCT
-NGCCTGAGGCN

ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GAGACTGAGGCT
GAAACTGAAACT

CRZ1(MacIsaac)/Yeast

Match Rank:9
Score:0.62
Offset:6
Orientation:forward strand
Alignment:GAGACTGAGGCT-
------GAGGCTG

IRF8/MA0652.1/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--GAGACTGAGGCT
TCGAAACCGAAACT