Information for 5-TTCGAGGCCA (Motif 8)


Reverse Opposite:

p-value:1e-7
log p-value:-1.736e+01
Information Content per bp:1.842
Number of Target Sequences with motif38.0
Percentage of Target Sequences with motif0.08%
Number of Background Sequences with motif4.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets12.6 +/- 3.2bp
Average Position of motif in Background9.8 +/- 5.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

XBP1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TTCGAGGCCA
CTTCGAG----

Nr5a2/MA0505.1/Jaspar

Match Rank:2
Score:0.72
Offset:-3
Orientation:forward strand
Alignment:---TTCGAGGCCA--
AAGTTCAAGGTCAGC

XBP1(MacIsaac)/Yeast

Match Rank:3
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TTCGAGGCCA
CTCGAGGA--

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:4
Score:0.71
Offset:0
Orientation:forward strand
Alignment:TTCGAGGCCA
NTCAAGGTCA

Esrra/MA0592.2/Jaspar

Match Rank:5
Score:0.70
Offset:0
Orientation:forward strand
Alignment:TTCGAGGCCA-
TTCAAGGTCAT

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:6
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TTCGAGGCCA
BTCAAGGTCA

XBP1/MA0414.1/Jaspar

Match Rank:7
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-TTCGAGGCCA
NCTCGAG----

RORA/MA0071.1/Jaspar

Match Rank:8
Score:0.68
Offset:0
Orientation:forward strand
Alignment:TTCGAGGCCA
ATCAAGGTCA

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TTCGAGGCCA-
-TCAAGGTCAN

ESRRB/MA0141.3/Jaspar

Match Rank:10
Score:0.65
Offset:1
Orientation:forward strand
Alignment:TTCGAGGCCA--
-TCAAGGTCATA