Information for 3-ATTGAGGGAT (Motif 6)


Reverse Opposite:

p-value:1e-8
log p-value:-1.879e+01
Information Content per bp:1.651
Number of Target Sequences with motif82.0
Percentage of Target Sequences with motif0.18%
Number of Background Sequences with motif24.7
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets13.3 +/- 4.3bp
Average Position of motif in Background14.1 +/- 6.3bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

z/dmmpmm(Pollard)/fly

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:ATTGAGGGAT-
-TTGAGTGATT

z/MA0255.1/Jaspar

Match Rank:2
Score:0.70
Offset:1
Orientation:forward strand
Alignment:ATTGAGGGAT-
-TTGAGTGATT

PH0134.1_Pbx1/Jaspar

Match Rank:3
Score:0.70
Offset:-5
Orientation:reverse strand
Alignment:-----ATTGAGGGAT--
NNNNNATTGATGNGTGN

z/dmmpmm(SeSiMCMC)/fly

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:ATTGAGGGAT
-TTGAGTG--

PBX1/MA0070.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:ATTGAGGGAT--
TTTGATTGATGN

ZNF410/MA0752.1/Jaspar

Match Rank:6
Score:0.65
Offset:-4
Orientation:reverse strand
Alignment:----ATTGAGGGAT---
GANTATTATGGGATGGA

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:7
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ATTGAGGGAT---
-ATGATKGATGRC

z/dmmpmm(Bigfoot)/fly

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:ATTGAGGGAT
--TGAGTG--

z/dmmpmm(Down)/fly

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:ATTGAGGGAT
--TGAGTG--

TBF1/MA0403.1/Jaspar

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:ATTGAGGGAT
--NTAGGGTT