Information for 2-AAAAAAAAAAAAAA (Motif 5)


Reverse Opposite:

p-value:1e-8
log p-value:-1.974e+01
Information Content per bp:1.811
Number of Target Sequences with motif65.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif14.6
Percentage of Background Sequences with motif0.03%
Average Position of motif in Targets13.6 +/- 3.6bp
Average Position of motif in Background13.5 +/- 3.9bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: polyA-repeat

Match Rank:1
Score:0.94
Offset:2
Orientation:forward strand
Alignment:AAAAAAAAAAAAAA
--AAAAAAAAAA--

PB0182.1_Srf_2/Jaspar

Match Rank:2
Score:0.87
Offset:-2
Orientation:forward strand
Alignment:--AAAAAAAAAAAAAA-
GTTAAAAAAAAAAATTA

RLR1?/SacCer-Promoters/Homer

Match Rank:3
Score:0.81
Offset:2
Orientation:reverse strand
Alignment:AAAAAAAAAAAAAA
--AAAARRGAAAAW

hb/dmmpmm(Noyes)/fly

Match Rank:4
Score:0.79
Offset:0
Orientation:forward strand
Alignment:AAAAAAAAAAAAAA
ACNAAAAAAACA--

PB0116.1_Elf3_2/Jaspar

Match Rank:5
Score:0.78
Offset:-2
Orientation:forward strand
Alignment:--AAAAAAAAAAAAAA-
GTTCAAAAAAAAAATTC

PB0093.1_Zfp105_1/Jaspar

Match Rank:6
Score:0.77
Offset:-1
Orientation:forward strand
Alignment:-AAAAAAAAAAAAAA
AACAAACAACAAGAG

SOC1/MA0554.1/Jaspar

Match Rank:7
Score:0.75
Offset:-1
Orientation:reverse strand
Alignment:-AAAAAAAAAAAAAA------
AAAAAAAAAAAAAAAAAAAAA

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:8
Score:0.75
Offset:-3
Orientation:forward strand
Alignment:---AAAAAAAAAAAAAA
TACTGGAAAAAAAA---

hb/dmmpmm(Down)/fly

Match Rank:9
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:AAAAAAAAAAAAAA
-CATAAAAAA----

hb/MA0049.1/Jaspar

Match Rank:10
Score:0.73
Offset:1
Orientation:forward strand
Alignment:AAAAAAAAAAAAAA
-GCATAAAAAA---