Information for 1-GAGACCCCCD (Motif 3)


Reverse Opposite:

p-value:1e-19
log p-value:-4.509e+01
Information Content per bp:1.686
Number of Target Sequences with motif609.0
Percentage of Target Sequences with motif1.35%
Number of Background Sequences with motif330.7
Percentage of Background Sequences with motif0.73%
Average Position of motif in Targets13.1 +/- 4.2bp
Average Position of motif in Background13.4 +/- 5.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

usp/dmmpmm(Bergman)/fly

Match Rank:1
Score:0.81
Offset:-1
Orientation:reverse strand
Alignment:-GAGACCCCCD
CGTGACCCC--

usp/MA0016.1/Jaspar

Match Rank:2
Score:0.81
Offset:-2
Orientation:reverse strand
Alignment:--GAGACCCCCD
CCGTGACCCC--

PB0025.1_Glis2_1/Jaspar

Match Rank:3
Score:0.81
Offset:-2
Orientation:forward strand
Alignment:--GAGACCCCCD----
TATCGACCCCCCACAG

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:4
Score:0.80
Offset:-3
Orientation:forward strand
Alignment:---GAGACCCCCD----
CATAAGACCACCATTAC

NRG1(MacIsaac)/Yeast

Match Rank:5
Score:0.79
Offset:1
Orientation:forward strand
Alignment:GAGACCCCCD
-GGACCCT--

ZBTB7C/MA0695.1/Jaspar

Match Rank:6
Score:0.79
Offset:0
Orientation:forward strand
Alignment:GAGACCCCCD--
GCGACCACCGAA

ZBTB7B/MA0694.1/Jaspar

Match Rank:7
Score:0.78
Offset:0
Orientation:forward strand
Alignment:GAGACCCCCD--
GCGACCACCGAA

PB0201.1_Zfp281_2/Jaspar

Match Rank:8
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--GAGACCCCCD-----
AGGAGACCCCCAATTTG

Hr46/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.76
Offset:1
Orientation:reverse strand
Alignment:GAGACCCCCD
-TGACCC---

NRG1/NRG1_H2O2Hi/[](Harbison)/Yeast

Match Rank:10
Score:0.76
Offset:1
Orientation:forward strand
Alignment:GAGACCCCCD
-GGACCCT--