Information for 5-TTTTATAT (Motif 10)


Reverse Opposite:

p-value:1e-6
log p-value:-1.409e+01
Information Content per bp:1.932
Number of Target Sequences with motif98.0
Percentage of Target Sequences with motif0.22%
Number of Background Sequences with motif41.0
Percentage of Background Sequences with motif0.09%
Average Position of motif in Targets12.9 +/- 4.4bp
Average Position of motif in Background12.5 +/- 7.1bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

TATA-box/Drosophila-Promoters/Homer

Match Rank:1
Score:0.85
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATAT
BSGCTTTTATAG

POL012.1_TATA-Box/Jaspar

Match Rank:2
Score:0.85
Offset:-7
Orientation:reverse strand
Alignment:-------TTTTATAT
NNNNNNCTTTTATAN

TBP/MA0108.2/Jaspar

Match Rank:3
Score:0.85
Offset:-7
Orientation:reverse strand
Alignment:-------TTTTATAT
NNNNNNCTTTTATAN

croc/dmmpmm(Bergman)/fly

Match Rank:4
Score:0.85
Offset:0
Orientation:reverse strand
Alignment:TTTTATAT
TTTTAT--

TBP(- other)/several species/AthaMap

Match Rank:5
Score:0.79
Offset:-3
Orientation:reverse strand
Alignment:---TTTTATAT-
GGTATTTATAGN

hb/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.78
Offset:0
Orientation:forward strand
Alignment:TTTTATAT--
TTTTTTATGC

PH0078.1_Hoxd13/Jaspar

Match Rank:7
Score:0.76
Offset:-4
Orientation:reverse strand
Alignment:----TTTTATAT----
NNANTTTTATTGGNNN

MOT2/MA0379.1/Jaspar

Match Rank:8
Score:0.76
Offset:3
Orientation:reverse strand
Alignment:TTTTATAT
---TATAT

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:9
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TTTTATAT--
TTTTATTRGN

Arid3a/MA0151.1/Jaspar

Match Rank:10
Score:0.75
Offset:0
Orientation:reverse strand
Alignment:TTTTATAT
TTTAAT--