FastQCFastQC Report
Sun 29 Jan 2017
SRR1917543.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1917543.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28916104
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGCTT14107950.043.45496445
CTGCTTG470850.038.54965245
TGTTCGA18050.030.16861730
CGAGAGT49150.029.98003817
TTCGAAT18500.028.95046632
AATGCCG17550.028.71612436
ATTGAGT107650.028.71356218
GTTCGAA19550.027.74066431
ATTCAGT228200.027.14955118
TGAGAGT299550.027.01378817
CGGGTTA9350.026.94764316
ATTTAGT291350.026.6390318
TGTTAGT159000.026.62789717
ATTAAGT103750.026.3886318
TTGAGTC388600.026.34043919
CGCCAGT45600.026.2458817
GAGAGTC937400.026.12508618
ATGCCGC15700.026.08114637
CGAATGC19450.026.02653534
GTTTAGT199600.026.0016818
Produced by FastQC (version 0.11.5)