FastQCFastQC Report
Sun 29 Jan 2017
SRR1917542.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR1917542.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences31082385
Sequences flagged as poor quality0
Sequence length51
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
TCTGCTT15167950.044.0491245
GCCGTAT17050.036.6866738
TTCGAAT30450.035.4784132
GGTTCGA31250.035.4324230
AATGCCG29350.034.80451636
CGAATGC30600.033.3827134
TGCCGAC21400.033.2247138
ATGCCGA21800.032.6150837
TTCGGAT15400.032.15142431
TGCCGTA19550.031.99527537
GTTCGAA34750.031.73507531
TCGAATG32400.031.52811433
CCGTATT20000.031.27764939
TCGGATG15800.031.05342932
CCGACTT23400.030.4830140
CGTATTC20650.030.40174740
GCCGACT23600.030.1296739
GTTCGGA16900.030.09590730
ATGCCGC25300.029.6149937
CTGCTTG306800.029.56558845
Produced by FastQC (version 0.11.5)