11183
11188 (process ID) old priority 0, new priority 10
################
ChIP data: /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/Najafabadi2015Data/hg38Mapping/ZNF317/out/align/rep1/SRR1370906_1.nodup.tagAlign.gz 
Control data: /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HughesZnfData/HughesInputData/input15MReadsNSCLess1.05.50MSubsample.tagAlign.gz 
strandshift(min): -500 
strandshift(step): 5 
strandshift(max) 1500 
user-defined peak shift 140 
exclusion(min): 10 
exclusion(max): NaN 
num parallel nodes: 1 
FDR threshold: 0.01 
NumPeaks Threshold: 3e+05 
Output Directory: /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/Najafabadi2015Data/hg38Mapping/ZNF317/out/peak/spp/rep1 
narrowPeak output file name: NA 
regionPeak output file name: /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/Najafabadi2015Data/hg38Mapping/ZNF317/out/peak/spp/rep1/SRR1370906_1.nodup.tagAlign_VS_input15MReadsNSCLess1.05.50MSubsample.tagAlign.regionPeak 
Rdata filename: NA 
plot pdf filename: /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/Najafabadi2015Data/hg38Mapping/ZNF317/out/peak/spp/rep1/SRR1370906_1.nodup.tagAlign.pdf 
result filename: /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/Najafabadi2015Data/hg38Mapping/ZNF317/out/peak/spp/rep1/SRR1370906_1.nodup.tagAlign_x_input15MReadsNSCLess1.05.50MSubsample.tagAlign.ccscore 
Overwrite files?: TRUE

Decompressing ChIP file
Decompressing control file
Reading ChIP tagAlign/BAM file /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/Najafabadi2015Data/hg38Mapping/ZNF317/out/align/rep1/SRR1370906_1.nodup.tagAlign.gz 
opened /tmp/17414.1.q/RtmpuCH3eA/SRR1370906_1.nodup.tagAlign2bf47706ec20
done. read 13585589 fragments
ChIP data read length 51 
[1] TRUE
Reading Control tagAlign/BAM file /srv/scratch/shared/surya/imk1/TFBindingPredictionProject/HughesZnfData/HughesInputData/input15MReadsNSCLess1.05.50MSubsample.tagAlign.gz 
opened /tmp/17414.1.q/RtmpuCH3eA/input15MReadsNSCLess1.05.50MSubsample.tagAlign2bf432422fad
done. read 50000000 fragments
Control data read length 68 
Calculating peak characteristics
Minimum cross-correlation value 0.1590959 
Minimum cross-correlation shift 1500 
Top 3 cross-correlation values 0.18193994537918 
Top 3 estimates for fragment length 140 
Window half size 210 
Phantom peak location 55 
Phantom peak Correlation 0.1671749 
Normalized Strand cross-correlation coefficient (NSC) 1.143587 
Relative Strand cross-correlation Coefficient (RSC) 2.827584 
Phantom Peak Quality Tag 2 
null device 
          1 
Removing read stacks
Finding peaks
finding background exclusion regions ... done
determining peaks on provided 1 control datasets:
using reversed signal for FDR calculations
bg.weight= 3.714156  excluding systematic background anomalies ... done
determining peaks on real data:
bg.weight= 0.2692401  excluding systematic background anomalies ... done
calculating statistical thresholds
FDR 0.99 threshold= 2.000174 
Detected 436056 peaks