Information for 13-RTCTGTGYACCA (Motif 9)


Reverse Opposite:

p-value:1e-33
log p-value:-7.786e+01
Information Content per bp:1.720
Number of Target Sequences with motif258.0
Percentage of Target Sequences with motif1.17%
Number of Background Sequences with motif300.1
Percentage of Background Sequences with motif0.40%
Average Position of motif in Targets166.3 +/- 93.9bp
Average Position of motif in Background201.5 +/- 183.1bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:1
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-RTCTGTGYACCA
WDNCTGGGCA---

POL009.1_DCE_S_II/Jaspar

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:RTCTGTGYACCA
-GCTGTG-----

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----RTCTGTGYACCA
VBSYGTCTGG------

sma-4/MA0925.1/Jaspar

Match Rank:4
Score:0.57
Offset:-3
Orientation:forward strand
Alignment:---RTCTGTGYACCA
AGTGTCTGGAC----

FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer

Match Rank:5
Score:0.56
Offset:0
Orientation:forward strand
Alignment:RTCTGTGYACCA
NYYTGTTTACHN

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:6
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--RTCTGTGYACCA
CTGTCTGG------

MET28/MA0332.1/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:RTCTGTGYACCA
--CTGTGG----

MET28(MacIsaac)/Yeast

Match Rank:8
Score:0.56
Offset:2
Orientation:forward strand
Alignment:RTCTGTGYACCA
--CTGTGG----

Tal1

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-RTCTGTGYACCA
CATCTG-------

PB0026.1_Gm397_1/Jaspar

Match Rank:10
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--RTCTGTGYACCA---
NNGTATGTGCACATNNN