Information for 2-AGAGGGCA (Motif 2)


Reverse Opposite:

p-value:1e-188
log p-value:-4.342e+02
Information Content per bp:1.795
Number of Target Sequences with motif5985.0
Percentage of Target Sequences with motif27.25%
Number of Background Sequences with motif13429.9
Percentage of Background Sequences with motif17.99%
Average Position of motif in Targets187.4 +/- 110.8bp
Average Position of motif in Background220.4 +/- 170.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC2/MA0738.1/Jaspar

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:AGAGGGCA-
NGTGGGCAT

Hic1/MA0739.1/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AGAGGGCA-
GGTTGGCAT

THAP1/MA0597.1/Jaspar

Match Rank:3
Score:0.74
Offset:0
Orientation:reverse strand
Alignment:AGAGGGCA-
TNNGGGCAG

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.70
Offset:-8
Orientation:reverse strand
Alignment:--------AGAGGGCA----
TGGCCACCAGGTGGCACTNT

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---AGAGGGCA-----
NNNNTTGGGCACNNCN

PB0118.1_Esrra_2/Jaspar

Match Rank:6
Score:0.69
Offset:-4
Orientation:forward strand
Alignment:----AGAGGGCA-----
GGCGAGGGGTCAAGGGC

Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer

Match Rank:7
Score:0.68
Offset:0
Orientation:reverse strand
Alignment:AGAGGGCA
ARNTGACA

PHD1(MacIsaac)/Yeast

Match Rank:8
Score:0.68
Offset:3
Orientation:forward strand
Alignment:AGAGGGCA-
---AGGCAC

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:9
Score:0.67
Offset:-3
Orientation:reverse strand
Alignment:---AGAGGGCA
AACAGATGGC-

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:10
Score:0.67
Offset:-6
Orientation:reverse strand
Alignment:------AGAGGGCA------
GCCASCAGGGGGCGCYVNNG