Information for 15-GCATCAGATCCC (Motif 11)


Reverse Opposite:

p-value:1e-26
log p-value:-6.004e+01
Information Content per bp:1.775
Number of Target Sequences with motif459.0
Percentage of Target Sequences with motif2.09%
Number of Background Sequences with motif822.6
Percentage of Background Sequences with motif1.10%
Average Position of motif in Targets165.5 +/- 80.5bp
Average Position of motif in Background188.6 +/- 165.5bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:1
Score:0.64
Offset:-3
Orientation:reverse strand
Alignment:---GCATCAGATCCC
ATTGCATCAK-----

AARE(HLH)/mES-cMyc-ChIP-Seq/Homer

Match Rank:2
Score:0.62
Offset:-4
Orientation:forward strand
Alignment:----GCATCAGATCCC
GATTGCATCA------

Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---GCATCAGATCCC
ATTGCATCAT-----

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:4
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GCATCAGATCCC
GKVTCADRTTWC

RAV1(1)(AP2/EREBP)/Arabidopsis thaliana/AthaMap

Match Rank:5
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCATCAGATCCC
CAGCAACAGAAA--

RAV1/MA0582.1/Jaspar

Match Rank:6
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--GCATCAGATCCC
CAGCAACAGAAA--

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:7
Score:0.59
Offset:4
Orientation:reverse strand
Alignment:GCATCAGATCCC
----CAGATCA-

SCRT2/MA0744.1/Jaspar

Match Rank:8
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCATCAGATCCC
ATGCAACAGGTGG-

ATF4/MA0833.1/Jaspar

Match Rank:9
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GCATCAGATCCC
TATTGCATCATCC---

PB0105.1_Arid3a_2/Jaspar

Match Rank:10
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----GCATCAGATCCC
ACCCGTATCAAATTT-