Information for 1-KGCCACHAGRKG (Motif 1)


Reverse Opposite:

p-value:1e-860
log p-value:-1.980e+03
Information Content per bp:1.620
Number of Target Sequences with motif10843.0
Percentage of Target Sequences with motif49.37%
Number of Background Sequences with motif19708.0
Percentage of Background Sequences with motif26.40%
Average Position of motif in Targets180.1 +/- 88.5bp
Average Position of motif in Background205.3 +/- 143.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.14
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0139.1/Jaspar

Match Rank:1
Score:0.85
Offset:-1
Orientation:forward strand
Alignment:-KGCCACHAGRKG------
TGGCCACCAGGGGGCGCTA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:2
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-KGCCACHAGRKG-------
TGGCCACCAGGTGGCACTNT

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:KGCCACHAGRKG---------
-GCCASCAGGGGGCGCYVNNG

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:4
Score:0.63
Offset:1
Orientation:forward strand
Alignment:KGCCACHAGRKG-
-CACAGCAGGGGG

CTCF/MA0531.1/Jaspar

Match Rank:5
Score:0.61
Offset:2
Orientation:forward strand
Alignment:KGCCACHAGRKG-----
--CCGCTAGATGGCGCC

MSN4/MA0342.1/Jaspar

Match Rank:6
Score:0.61
Offset:7
Orientation:forward strand
Alignment:KGCCACHAGRKG
-------AGGGG

RPH1/Literature(Harbison)/Yeast

Match Rank:7
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:KGCCACHAGRKG
--CCTTAAGGGG

RPH1(MacIsaac)/Yeast

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:KGCCACHAGRKG
--CCTTAAGGGG

MSN4/Literature(Harbison)/Yeast

Match Rank:9
Score:0.61
Offset:6
Orientation:forward strand
Alignment:KGCCACHAGRKG-
------AAGGGGN

opa/dmmpmm(Noyes)/fly

Match Rank:10
Score:0.60
Offset:3
Orientation:forward strand
Alignment:KGCCACHAGRKG---
---CAGCGGGGGGTC