cmd = /srv/scratch/imk1/TFBindingPredictionProject/MouseMutantData/indivRep_allPeaks-pr1.IDR0.05.ZF7vsWT.Neg.fa fasta /srv/scratch/imk1/TFBindingPredictionProject/MouseMutantData/indivRep_allPeaks-pr1.IDR0.05.ZF7vsWT.HomerResults/ -fasta /srv/scratch/imk1/TFBindingPredictionProject/MouseMutantData/indivRep_allPeaks-pr1.IDR0.05.ZF7vsWT.Pos.fa