Information for 7-VMTCTASTGC (Motif 8)


Reverse Opposite:

p-value:1e-126
log p-value:-2.916e+02
Information Content per bp:1.647
Number of Target Sequences with motif7510.0
Percentage of Target Sequences with motif13.72%
Number of Background Sequences with motif6939.0
Percentage of Background Sequences with motif9.42%
Average Position of motif in Targets184.7 +/- 108.5bp
Average Position of motif in Background221.0 +/- 207.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PHD1/MA0355.1/Jaspar

Match Rank:1
Score:0.68
Offset:4
Orientation:reverse strand
Alignment:VMTCTASTGC----
----NGNTGCAGGN

RAV1(1)(AP2/EREBP)/Arabidopsis thaliana/AthaMap

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:VMTCTASTGC--
NTTCTGTTGCNN

RAV1/MA0582.1/Jaspar

Match Rank:3
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:VMTCTASTGC--
NTTCTGTTGCNN

POL002.1_INR/Jaspar

Match Rank:4
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:VMTCTASTGC
--NNNANTGA

HIC2/MA0738.1/Jaspar

Match Rank:5
Score:0.61
Offset:6
Orientation:forward strand
Alignment:VMTCTASTGC-----
------ATGCCCACC

PHD1(MacIsaac)/Yeast

Match Rank:6
Score:0.61
Offset:6
Orientation:reverse strand
Alignment:VMTCTASTGC--
------GTGCCT

SOK2/SOK2_BUT14/4-SUT1(Harbison)/Yeast

Match Rank:7
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:VMTCTASTGC-
---TNCCTGCA

SOK2/MA0385.1/Jaspar

Match Rank:8
Score:0.60
Offset:3
Orientation:reverse strand
Alignment:VMTCTASTGC----
---NNCCTGCAGGT

DAL82/MA0291.1/Jaspar

Match Rank:9
Score:0.60
Offset:3
Orientation:forward strand
Alignment:VMTCTASTGC--
---AATGTGCGC

CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:10
Score:0.60
Offset:2
Orientation:forward strand
Alignment:VMTCTASTGC--
--NATGTTGCAA