Information for 5-CCTGBAGG (Motif 4)


Reverse Opposite:

p-value:1e-253
log p-value:-5.843e+02
Information Content per bp:1.681
Number of Target Sequences with motif35451.0
Percentage of Target Sequences with motif64.76%
Number of Background Sequences with motif40771.7
Percentage of Background Sequences with motif55.34%
Average Position of motif in Targets195.7 +/- 121.5bp
Average Position of motif in Background227.6 +/- 203.1bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.48
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SOK2/MA0385.1/Jaspar

Match Rank:1
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-CCTGBAGG--
ACCTGCAGGCA

PHD1/PHD1_BUT90/8-SUT1(Harbison)/Yeast

Match Rank:2
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CCTGBAGG
CCTGCGGC

SOK2/SOK2_BUT14/4-SUT1(Harbison)/Yeast

Match Rank:3
Score:0.69
Offset:2
Orientation:forward strand
Alignment:CCTGBAGG--
--TGCAGGNA

XBP1(MacIsaac)/Yeast

Match Rank:4
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CCTGBAGG
TCCTCGAG-

ABI3/MA0564.1/Jaspar

Match Rank:5
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CCTGBAGG
TGCATGCAG-

PHD1/MA0355.1/Jaspar

Match Rank:6
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCTGBAGG-
ACCTGCAGCA

AtLEC2(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:7
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CCTGBAGG
TCCATGCAAA

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:8
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCTGBAGG-
CCCCCTGCTGTG

sna/dmmpmm(Papatsenko)/fly

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CCTGBAGG
CCACCTGC---

Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer

Match Rank:10
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CCTGBAGG----
TTTCCTGGAAAGNNN