Information for 3-GCCAKAAGAG (Motif 2)


Reverse Opposite:

p-value:1e-578
log p-value:-1.332e+03
Information Content per bp:1.862
Number of Target Sequences with motif4151.0
Percentage of Target Sequences with motif7.58%
Number of Background Sequences with motif1294.6
Percentage of Background Sequences with motif1.76%
Average Position of motif in Targets180.2 +/- 106.2bp
Average Position of motif in Background239.7 +/- 216.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SEP3/MA0563.1/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:GCCAKAAGAG--
-CCAAAAATGGA

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GCCAKAAGAG
TGCCAA-----

NFIX/MA0671.1/Jaspar

Match Rank:3
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCCAKAAGAG
CGTGCCAAG----

pho/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GCCAKAAGAG-
GAAGCCATAACGGC

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--GCCAKAAGAG
ATGCCAGACN--

CDX2/MA0465.1/Jaspar

Match Rank:6
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--GCCAKAAGAG
AAGCCATAAAA-

MET32/MA0334.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GCCAKAAGAG
CGCCACA----

DOF5.7/MA0984.1/Jaspar

Match Rank:8
Score:0.59
Offset:3
Orientation:forward strand
Alignment:GCCAKAAGAG-
---AAAAGAGG

SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer

Match Rank:9
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCCAKAAGAG-
-CCAAAAAGGG

MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:GCCAKAAGAG
GTCACATGAY