Information for 9-ARCACCCATA (Motif 10)


Reverse Opposite:

p-value:1e-98
log p-value:-2.264e+02
Information Content per bp:1.699
Number of Target Sequences with motif3866.0
Percentage of Target Sequences with motif7.06%
Number of Background Sequences with motif3190.4
Percentage of Background Sequences with motif4.33%
Average Position of motif in Targets177.8 +/- 103.6bp
Average Position of motif in Background226.7 +/- 216.8bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

bab1/dmmpmm(Pollard)/fly

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ARCACCCATA
AACAATAATA

RAP1(MacIsaac)/Yeast

Match Rank:2
Score:0.67
Offset:1
Orientation:forward strand
Alignment:ARCACCCATA---
-ACACCCATACAC

RAP1/MA0359.1/Jaspar

Match Rank:3
Score:0.67
Offset:2
Orientation:forward strand
Alignment:ARCACCCATA--
--CACCCATACA

AFT2/AFT2_H2O2Lo/10-RCS1[~AFT2](Harbison)/Yeast

Match Rank:4
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:ARCACCCATA
-GCACCC---

GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer

Match Rank:5
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--ARCACCCATA
GGACCACCCACG

RAP1/RAP1_YPD/85-RAP1(Harbison)/Yeast

Match Rank:6
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:ARCACCCATA--
--CACCCGTACA

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-ARCACCCATA
AAGCACTTAA-

FHL1/FHL1_YPD/47-RAP1(Harbison)/Yeast

Match Rank:8
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:ARCACCCATA---
--CACCCGTACAT

caup/MA0217.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-ARCACCCATA
TAACA------

hkb/dmmpmm(Papatsenko)/fly

Match Rank:10
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-ARCACCCATA
CAACGCCCA--