Information for 1-CCACYAGGGGGC (Motif 1)


Reverse Opposite:

p-value:1e-10066
log p-value:-2.318e+04
Information Content per bp:1.731
Number of Target Sequences with motif40112.0
Percentage of Target Sequences with motif73.27%
Number of Background Sequences with motif11236.9
Percentage of Background Sequences with motif15.25%
Average Position of motif in Targets178.7 +/- 77.9bp
Average Position of motif in Background193.4 +/- 174.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.12
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:1
Score:0.94
Offset:-1
Orientation:reverse strand
Alignment:-CCACYAGGGGGC-------
GCCASCAGGGGGCGCYVNNG

CTCF/MA0139.1/Jaspar

Match Rank:2
Score:0.93
Offset:-3
Orientation:forward strand
Alignment:---CCACYAGGGGGC----
TGGCCACCAGGGGGCGCTA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.92
Offset:-3
Orientation:reverse strand
Alignment:---CCACYAGGGGGC-----
TGGCCACCAGGTGGCACTNT

CTCF/MA0531.1/Jaspar

Match Rank:4
Score:0.74
Offset:0
Orientation:forward strand
Alignment:CCACYAGGGGGC---
CCGCTAGATGGCGCC

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-CCACYAGGGGGC
CACAGCAGGGGG-

ZIC4/MA0751.1/Jaspar

Match Rank:6
Score:0.65
Offset:-2
Orientation:reverse strand
Alignment:--CCACYAGGGGGC-
NCNCAGCGGGGGGTC

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:CCACYAGGGGGC
--AACAGATGGC

ZIC1/MA0696.1/Jaspar

Match Rank:8
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CCACYAGGGGGC-
CACAGCGGGGGGTC

opa/dmmpmm(Noyes)/fly

Match Rank:9
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CCACYAGGGGGC-
-CAGCGGGGGGTC

PB0076.1_Sp4_1/Jaspar

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:CCACYAGGGGGC------
-NNNAAGGGGGCGGGNNN