Information for 7-AGTGGCCA (Motif 8)


Reverse Opposite:

p-value:1e-84
log p-value:-1.950e+02
Information Content per bp:1.667
Number of Target Sequences with motif7908.0
Percentage of Target Sequences with motif14.18%
Number of Background Sequences with motif7442.3
Percentage of Background Sequences with motif10.55%
Average Position of motif in Targets183.7 +/- 106.2bp
Average Position of motif in Background228.0 +/- 212.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.05
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SKN7/MA0381.1/Jaspar

Match Rank:1
Score:0.70
Offset:3
Orientation:forward strand
Alignment:AGTGGCCA-
---GGCCAT

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:AGTGGCCA-
---TGCCAA

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.69
Offset:0
Orientation:reverse strand
Alignment:AGTGGCCA-
NGTGGGCAT

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.69
Offset:1
Orientation:forward strand
Alignment:AGTGGCCA--
-CGTGCCAAG

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.67
Offset:-1
Orientation:forward strand
Alignment:-AGTGGCCA-
CAAAGGTCAG

NR4A2/MA0160.1/Jaspar

Match Rank:6
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AGTGGCCA-
-AAGGTCAC

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.65
Offset:-4
Orientation:forward strand
Alignment:----AGTGGCCA----
GGCAAAAGTCCAATAA

RFX1/MA0365.1/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGTGGCCA
GGTTGCCA

PB0049.1_Nr2f2_1/Jaspar

Match Rank:9
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGTGGCCA----
TCTCAAAGGTCACGAG

PB0053.1_Rara_1/Jaspar

Match Rank:10
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----AGTGGCCA----
TCTCAAAGGTCACCTG