Information for 10-CAGGGGATCTGA (Motif 7)


Reverse Opposite:

p-value:1e-95
log p-value:-2.192e+02
Information Content per bp:1.698
Number of Target Sequences with motif1720.0
Percentage of Target Sequences with motif3.08%
Number of Background Sequences with motif974.7
Percentage of Background Sequences with motif1.38%
Average Position of motif in Targets173.9 +/- 89.7bp
Average Position of motif in Background229.3 +/- 213.4bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

REI1/MA0364.1/Jaspar

Match Rank:1
Score:0.67
Offset:-1
Orientation:reverse strand
Alignment:-CAGGGGATCTGA
TCAGGGG------

MSN4/Literature(Harbison)/Yeast

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CAGGGGATCTGA
AAGGGGN-----

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:3
Score:0.64
Offset:4
Orientation:forward strand
Alignment:CAGGGGATCTGA
----TGATCTG-

RGM1/MA0366.1/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAGGGGATCTGA
-AGGGG------

GATA11/MA1014.1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:forward strand
Alignment:CAGGGGATCTGA
---TAGATCTG-

AGP1(GATA)/Nicotiana tabacum/AthaMap

Match Rank:6
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CAGGGGATCTGA
--NTAGATCTGA

MSN4/MA0342.1/Jaspar

Match Rank:7
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CAGGGGATCTGA
-AGGGG------

SRD1/MA0389.1/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:CAGGGGATCTGA
--GTAGATCT--

ARR1/MA0945.1/Jaspar

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:CAGGGGATCTGA
-AGCGAATCTT-

GATA10/MA1013.1/Jaspar

Match Rank:10
Score:0.61
Offset:3
Orientation:forward strand
Alignment:CAGGGGATCTGA
---TAGATCTG-