Information for 6-TTTTGCCTGCAT (Motif 3)


Reverse Opposite:

p-value:1e-106
log p-value:-2.452e+02
Information Content per bp:1.591
Number of Target Sequences with motif1638.0
Percentage of Target Sequences with motif2.94%
Number of Background Sequences with motif850.4
Percentage of Background Sequences with motif1.21%
Average Position of motif in Targets167.9 +/- 93.8bp
Average Position of motif in Background218.4 +/- 228.3bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SOK2(MacIsaac)/Yeast

Match Rank:1
Score:0.77
Offset:2
Orientation:reverse strand
Alignment:TTTTGCCTGCAT
--TTGCCTGC--

SOK2/SOK2_BUT14/4-SUT1(Harbison)/Yeast

Match Rank:2
Score:0.74
Offset:3
Orientation:reverse strand
Alignment:TTTTGCCTGCAT
---TNCCTGCA-

SOK2/MA0385.1/Jaspar

Match Rank:3
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:TTTTGCCTGCAT--
---NNCCTGCAGGT

AtLEC2(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:TTTTGCCTGCAT
-TTTGCATGGA-

ABI3/MA0564.1/Jaspar

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TTTTGCCTGCAT
--CTGCATGCA-

RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer

Match Rank:6
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TTTTGCCTGCAT
---TGCATGCA-

MOT3/MA0340.1/Jaspar

Match Rank:7
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TTTTGCCTGCAT
---TACCTN---

MOT3/Literature(Harbison)/Yeast

Match Rank:8
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TTTTGCCTGCAT
---TACCTN---

MOT3(MacIsaac)/Yeast

Match Rank:9
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TTTTGCCTGCAT
---TACCTN---

PHD1/MA0355.1/Jaspar

Match Rank:10
Score:0.65
Offset:4
Orientation:forward strand
Alignment:TTTTGCCTGCAT--
----ACCTGCAGCA