Information for 23-AAGGAKGGATGG (Motif 18)


Reverse Opposite:

p-value:1e-7
log p-value:-1.685e+01
Information Content per bp:1.700
Number of Target Sequences with motif746.0
Percentage of Target Sequences with motif1.34%
Number of Background Sequences with motif714.9
Percentage of Background Sequences with motif1.01%
Average Position of motif in Targets225.1 +/- 135.3bp
Average Position of motif in Background257.1 +/- 231.6bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:1
Score:0.70
Offset:-2
Orientation:forward strand
Alignment:--AAGGAKGGATGG----
GGAAGGAAGGAAGGAAGG

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:2
Score:0.65
Offset:1
Orientation:reverse strand
Alignment:AAGGAKGGATGG-
-ATGATKGATGRC

PBX1/MA0070.1/Jaspar

Match Rank:3
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:AAGGAKGGATGG
TTTGATTGATGN

E2F6/MA0471.1/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:AAGGAKGGATGG
-GGGCGGGAAGG

Unknown2/Drosophila-Promoters/Homer

Match Rank:5
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:AAGGAKGGATGG
---TAGKGATG-

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-AAGGAKGGATGG----
NNNNNATTGATGNGTGN

Hoxa9/MA0594.1/Jaspar

Match Rank:7
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:AAGGAKGGATGG-
--TGATTTATGGC

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:8
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AAGGAKGGATGG--
--TGATTRATGGCY

LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer

Match Rank:9
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AAGGAKGGATGG
-ATGATTRATG-

SIP4/SIP4_SM/9-SIP4(Harbison)/Yeast

Match Rank:10
Score:0.57
Offset:1
Orientation:forward strand
Alignment:AAGGAKGGATGG--
-CGGNTGAATGGAA