Information for 19-CAGCACCCACAT (Motif 17)


Reverse Opposite:

p-value:1e-29
log p-value:-6.819e+01
Information Content per bp:1.701
Number of Target Sequences with motif3536.0
Percentage of Target Sequences with motif6.34%
Number of Background Sequences with motif3430.9
Percentage of Background Sequences with motif4.86%
Average Position of motif in Targets172.4 +/- 96.6bp
Average Position of motif in Background229.7 +/- 223.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AFT2/AFT2_H2O2Lo/10-RCS1[~AFT2](Harbison)/Yeast

Match Rank:1
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CAGCACCCACAT
--GCACCC----

GCM1/MA0646.1/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:reverse strand
Alignment:CAGCACCCACAT-
--GTACCCGCATN

GCM2/MA0767.1/Jaspar

Match Rank:3
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CAGCACCCACAT-
---TACCCGCATN

AFT2(MacIsaac)/Yeast

Match Rank:4
Score:0.64
Offset:1
Orientation:forward strand
Alignment:CAGCACCCACAT
-TGCACCC----

PB0024.1_Gcm1_1/Jaspar

Match Rank:5
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CAGCACCCACAT----
TCGTACCCGCATCATT

RCS1(MacIsaac)/Yeast

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CAGCACCCACAT
-TGCACCC----

RCS1/RCS1_H2O2Hi/35-RCS1(Harbison)/Yeast

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-CAGCACCCACAT
ANTGCACCC----

gcm/dmmpmm(Bergman)/fly

Match Rank:8
Score:0.62
Offset:4
Orientation:reverse strand
Alignment:CAGCACCCACAT
----ACCCGCAT

ERF043/MA0996.1/Jaspar

Match Rank:9
Score:0.62
Offset:3
Orientation:reverse strand
Alignment:CAGCACCCACAT
---CACCGACA-

PB0130.1_Gm397_2/Jaspar

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--CAGCACCCACAT--
AGCGGCACACACGCAA