Information for 17-GGCAGCTCACAA (Motif 16)


Reverse Opposite:

p-value:1e-32
log p-value:-7.509e+01
Information Content per bp:1.723
Number of Target Sequences with motif3500.0
Percentage of Target Sequences with motif6.28%
Number of Background Sequences with motif3340.7
Percentage of Background Sequences with motif4.74%
Average Position of motif in Targets173.0 +/- 95.4bp
Average Position of motif in Background233.7 +/- 233.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0208.1_Zscan4_2/Jaspar

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GGCAGCTCACAA----
CGAAGCACACAAAATA

RTG3/Literature(Harbison)/Yeast

Match Rank:2
Score:0.63
Offset:4
Orientation:forward strand
Alignment:GGCAGCTCACAA
----GGTCAC--

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.62
Offset:0
Orientation:forward strand
Alignment:GGCAGCTCACAA----
AGCGGCACACACGCAA

YAP1/YAP1_H2O2Lo/3-YAP1(Harbison)/Yeast

Match Rank:4
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:GGCAGCTCACAA-
----GCTGACTAA

Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer

Match Rank:5
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GGCAGCTCACAA-
-GGTGYTGACAGS

caup/MA0217.1/Jaspar

Match Rank:6
Score:0.59
Offset:6
Orientation:forward strand
Alignment:GGCAGCTCACAA
------TAACA-

PB0172.1_Sox1_2/Jaspar

Match Rank:7
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GGCAGCTCACAA------
---NNNTAACAATTATAN

Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer

Match Rank:8
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:GGCAGCTCACAA
----RHTGWCAR

POL010.1_DCE_S_III/Jaspar

Match Rank:9
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GGCAGCTCACAA
---NGCTN----

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:10
Score:0.58
Offset:3
Orientation:forward strand
Alignment:GGCAGCTCACAA-
---VGCTGWCAVB