Information for 11-ATCTCTCCAG (Motif 13)


Reverse Opposite:

p-value:1e-45
log p-value:-1.049e+02
Information Content per bp:1.853
Number of Target Sequences with motif4761.0
Percentage of Target Sequences with motif8.54%
Number of Background Sequences with motif4532.5
Percentage of Background Sequences with motif6.42%
Average Position of motif in Targets179.6 +/- 116.6bp
Average Position of motif in Background223.1 +/- 234.6bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.03
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:ATCTCTCCAG
CTCTCTCY--

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:forward strand
Alignment:ATCTCTCCAG
RSCACTYRAG

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:3
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-ATCTCTCCAG
AGCCACTCAAG

z/dmmpmm(Pollard)/fly

Match Rank:4
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATCTCTCCAG
ANTCACTCAA-

z/MA0255.1/Jaspar

Match Rank:5
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-ATCTCTCCAG
ANTCACTCAA-

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:ATCTCTCCAG
NSCACTYVAV

SREBF2/MA0596.1/Jaspar

Match Rank:7
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:ATCTCTCCAG
ATCACCCCAT

Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.60
Offset:0
Orientation:forward strand
Alignment:ATCTCTCCAG
ATCACCCCAT

GFX(?)/Promoter/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:ATCTCTCCAG---
-TCTCGCGAGAAT

Bcl6/MA0463.1/Jaspar

Match Rank:10
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:ATCTCTCCAG----
NGCTTTCTAGGAAN