Information for 10-GGTSCYCW (Motif 12)


Reverse Opposite:

p-value:1e-51
log p-value:-1.189e+02
Information Content per bp:1.457
Number of Target Sequences with motif25183.0
Percentage of Target Sequences with motif45.16%
Number of Background Sequences with motif28857.4
Percentage of Background Sequences with motif40.90%
Average Position of motif in Targets191.2 +/- 120.3bp
Average Position of motif in Background233.6 +/- 216.4bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.32
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ARALYDRAFT_897773/MA1054.1/Jaspar

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--GGTSCYCW
GTGGTCCCCA

PB0052.1_Plagl1_1/Jaspar

Match Rank:2
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----GGTSCYCW---
TTGGGGGCGCCCCTAG

AFT2/AFT2_H2O2Lo/10-RCS1[~AFT2](Harbison)/Yeast

Match Rank:3
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-GGTSCYCW
GGGTGC---

PCF5(TCP)/Oryza sativa/AthaMap

Match Rank:4
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--GGTSCYCW
GTGGTCCCGC

PB0133.1_Hic1_2/Jaspar

Match Rank:5
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---GGTSCYCW-----
GGGTGTGCCCAAAAGG

ABI4(2)(AP2/EREBP)/Zea mays/AthaMap

Match Rank:6
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-GGTSCYCW-
CGGTGCTTCC

AFT2(MacIsaac)/Yeast

Match Rank:7
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-GGTSCYCW
GGGTGCA--

TCP5/MA1067.1/Jaspar

Match Rank:8
Score:0.63
Offset:-2
Orientation:reverse strand
Alignment:--GGTSCYCW
GTGGTCCC--

TCP16/MA0587.1/Jaspar

Match Rank:9
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---GGTSCYCW
CCGGGTCCAC-

RCS1(MacIsaac)/Yeast

Match Rank:10
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGTSCYCW
GGGTGCA--