Information for 12-TTTTGCCTGCAT (Motif 7)


Reverse Opposite:

p-value:1e-79
log p-value:-1.824e+02
Information Content per bp:1.699
Number of Target Sequences with motif1585.0
Percentage of Target Sequences with motif2.96%
Number of Background Sequences with motif1042.3
Percentage of Background Sequences with motif1.42%
Average Position of motif in Targets173.0 +/- 101.8bp
Average Position of motif in Background205.1 +/- 193.4bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SOK2(MacIsaac)/Yeast

Match Rank:1
Score:0.78
Offset:2
Orientation:reverse strand
Alignment:TTTTGCCTGCAT
--TTGCCTGC--

AtLEC2(ABI3/VP1)/Arabidopsis thaliana/AthaMap

Match Rank:2
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:TTTTGCCTGCAT
-TTTGCATGGA-

SOK2/SOK2_BUT14/4-SUT1(Harbison)/Yeast

Match Rank:3
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:TTTTGCCTGCAT
---TNCCTGCA-

NAC058/MA0938.1/Jaspar

Match Rank:4
Score:0.66
Offset:2
Orientation:reverse strand
Alignment:TTTTGCCTGCAT
--TTGCGTGN--

MOT3/Literature(Harbison)/Yeast

Match Rank:5
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TTTTGCCTGCAT
---TACCTN---

MOT3(MacIsaac)/Yeast

Match Rank:6
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TTTTGCCTGCAT
---TACCTN---

MOT3/MA0340.1/Jaspar

Match Rank:7
Score:0.65
Offset:3
Orientation:reverse strand
Alignment:TTTTGCCTGCAT
---TACCTN---

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:8
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TTTTGCCTGCAT
--TTGCGTGCVA

NAC080/MA0939.1/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TTTTGCCTGCAT
--TTGCGTGT--

POU2F2/MA0507.1/Jaspar

Match Rank:10
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---TTTTGCCTGCAT
TTCATTTGCATAT--