Information for 4-AGTGGCCA (Motif 6)


Reverse Opposite:

p-value:1e-86
log p-value:-1.991e+02
Information Content per bp:1.622
Number of Target Sequences with motif15887.0
Percentage of Target Sequences with motif29.64%
Number of Background Sequences with motif18135.0
Percentage of Background Sequences with motif24.66%
Average Position of motif in Targets189.6 +/- 116.1bp
Average Position of motif in Background229.6 +/- 193.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.11
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SKN7/MA0381.1/Jaspar

Match Rank:1
Score:0.75
Offset:3
Orientation:forward strand
Alignment:AGTGGCCA-
---GGCCAT

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.72
Offset:3
Orientation:reverse strand
Alignment:AGTGGCCA-
---TGCCAA

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.71
Offset:-3
Orientation:forward strand
Alignment:---AGTGGCCA-----
GGGTGTGCCCAAAAGG

NFIX/MA0671.1/Jaspar

Match Rank:4
Score:0.70
Offset:1
Orientation:forward strand
Alignment:AGTGGCCA--
-CGTGCCAAG

POL004.1_CCAAT-box/Jaspar

Match Rank:5
Score:0.68
Offset:0
Orientation:forward strand
Alignment:AGTGGCCA----
ACTAGCCAATCA

HIC2/MA0738.1/Jaspar

Match Rank:6
Score:0.65
Offset:1
Orientation:forward strand
Alignment:AGTGGCCA--
-ATGCCCACC

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AGTGGCCA----
--TGCCCAGNHW

HAP2/MA0313.1/Jaspar

Match Rank:8
Score:0.64
Offset:4
Orientation:reverse strand
Alignment:AGTGGCCA-
----ACCAA

pho/dmmpmm(Bergman)/fly

Match Rank:9
Score:0.64
Offset:4
Orientation:forward strand
Alignment:AGTGGCCA--
----GCCATT

RTG3/Literature(Harbison)/Yeast

Match Rank:10
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AGTGGCCA
-GTGACC-