Information for 9-CCAGGGGATCTG (Motif 5)


Reverse Opposite:

p-value:1e-105
log p-value:-2.421e+02
Information Content per bp:1.689
Number of Target Sequences with motif3003.0
Percentage of Target Sequences with motif5.60%
Number of Background Sequences with motif2285.0
Percentage of Background Sequences with motif3.11%
Average Position of motif in Targets175.5 +/- 95.8bp
Average Position of motif in Background230.8 +/- 201.0bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer

Match Rank:1
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CCAGGGGATCTG
GTCCCCAGGGGA----

ARR1/MA0945.1/Jaspar

Match Rank:2
Score:0.64
Offset:2
Orientation:forward strand
Alignment:CCAGGGGATCTG
--AGCGAATCTT

REI1/MA0364.1/Jaspar

Match Rank:3
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCAGGGGATCTG
TCAGGGG-----

ARR10/MA0121.1/Jaspar

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:CCAGGGGATCTG
---GCGGATCT-

MSN4/Literature(Harbison)/Yeast

Match Rank:5
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CCAGGGGATCTG
-AAGGGGN----

RGM1/MA0366.1/Jaspar

Match Rank:6
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCAGGGGATCTG
--AGGGG-----

MZF1/MA0056.1/Jaspar

Match Rank:7
Score:0.61
Offset:2
Orientation:forward strand
Alignment:CCAGGGGATCTG
--TGGGGA----

ZmHOX2a(2)(HD-HOX)/Zea mays/AthaMap

Match Rank:8
Score:0.60
Offset:5
Orientation:forward strand
Alignment:CCAGGGGATCTG
-----TGATCTG

MSN4/MA0342.1/Jaspar

Match Rank:9
Score:0.60
Offset:2
Orientation:forward strand
Alignment:CCAGGGGATCTG
--AGGGG-----

GAT4/MA0302.1/Jaspar

Match Rank:10
Score:0.59
Offset:2
Orientation:reverse strand
Alignment:CCAGGGGATCTG-
--NNTAGATCTNN