Information for 25-TTCTTTCTTTCT (Motif 20)


Reverse Opposite:

p-value:1e0
log p-value:-5.499e-01
Information Content per bp:1.937
Number of Target Sequences with motif556.0
Percentage of Target Sequences with motif1.04%
Number of Background Sequences with motif770.4
Percentage of Background Sequences with motif1.05%
Average Position of motif in Targets216.5 +/- 149.0bp
Average Position of motif in Background274.1 +/- 182.4bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

GAGA-repeat/SacCer-Promoters/Homer

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--TTCTTTCTTTCT-
CTYTCTYTCTCTCTC

AT/dmmpmm(Papatsenko)/fly

Match Rank:2
Score:0.69
Offset:-1
Orientation:forward strand
Alignment:-TTCTTTCTTTCT
ATTCGTTCAT---

SeqBias: GA-repeat

Match Rank:3
Score:0.68
Offset:1
Orientation:reverse strand
Alignment:TTCTTTCTTTCT
-TCTCTCTCTC-

SeqBias: polyA-repeat

Match Rank:4
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:TTCTTTCTTTCT
TTTTTTTTTT--

AZF1/MA0277.1/Jaspar

Match Rank:5
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:TTCTTTCTTTCT
---TTTCTTTTT

br-Z4/dmmpmm(Bergman)/fly

Match Rank:6
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:TTCTTTCTTTCT
-TCTTTAC----

SOC1/MA0554.1/Jaspar

Match Rank:7
Score:0.64
Offset:-7
Orientation:forward strand
Alignment:-------TTCTTTCTTTCT--
TTTTTTTTTTTTTTTTTTTTT

Trl/dmmpmm(Down)/fly

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TTCTTTCTTTCT-
-GCTCTCTCTCTC

blmp-1/MA0537.1/Jaspar

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:TTCTTTCTTTCT
TTTTCNCTTTT-

PB0061.1_Sox11_1/Jaspar

Match Rank:10
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---TTCTTTCTTTCT--
NNNTCCTTTGTTCTNNN