Information for 5-GDKGGCAKCA (Motif 2)


Reverse Opposite:

p-value:1e-524
log p-value:-1.208e+03
Information Content per bp:1.468
Number of Target Sequences with motif5100.0
Percentage of Target Sequences with motif9.52%
Number of Background Sequences with motif2212.0
Percentage of Background Sequences with motif3.01%
Average Position of motif in Targets186.4 +/- 103.3bp
Average Position of motif in Background220.3 +/- 186.6bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.01
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

AARE(HLH)/mES-cMyc-ChIP-Seq/Homer

Match Rank:1
Score:0.68
Offset:0
Orientation:forward strand
Alignment:GDKGGCAKCA
GATTGCATCA

PB0059.1_Six6_1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--GDKGGCAKCA-----
AATAGGGTATCATATAT

HIC2/MA0738.1/Jaspar

Match Rank:3
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-GDKGGCAKCA
NGTGGGCAT--

PH0162.1_Six2/Jaspar

Match Rank:4
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--GDKGGCAKCA-----
AATGGGGTATCACGTTT

PH0166.1_Six6_2/Jaspar

Match Rank:5
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GDKGGCAKCA-----
AATAGGGTATCAATATT

PH0161.1_Six1/Jaspar

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GDKGGCAKCA-----
GATGGGGTATCATTTTT

Six3/MA0631.1/Jaspar

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GDKGGCAKCA-----
GATAGGGTATCACTAAT

PH0163.1_Six3/Jaspar

Match Rank:8
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GDKGGCAKCA-----
GATAGGGTATCACTAAT

PH0165.1_Six6_1/Jaspar

Match Rank:9
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GDKGGCAKCA-----
AATAGGGTATCAATTAT

Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer

Match Rank:10
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GDKGGCAKCA-
-ATTGCATCAK