Information for 24-RAGGAABGAAGG (Motif 18)


Reverse Opposite:

p-value:1e-2
log p-value:-5.859e+00
Information Content per bp:1.515
Number of Target Sequences with motif359.0
Percentage of Target Sequences with motif0.67%
Number of Background Sequences with motif402.2
Percentage of Background Sequences with motif0.55%
Average Position of motif in Targets224.2 +/- 130.9bp
Average Position of motif in Background262.3 +/- 216.8bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:1
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--RAGGAABGAAGG----
GGAAGGAAGGAAGGAAGG

pan/dmmpmm(Bergman)/fly

Match Rank:2
Score:0.62
Offset:1
Orientation:forward strand
Alignment:RAGGAABGAAGG
-AAGATCAAAGG

T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer

Match Rank:3
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:RAGGAABGAAGG-
-AGAAACGAAAGT

TEC1/TEC1_YPD/[](Harbison)/Yeast

Match Rank:4
Score:0.59
Offset:1
Orientation:forward strand
Alignment:RAGGAABGAAGG
-AGGAATG----

ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:5
Score:0.59
Offset:-2
Orientation:forward strand
Alignment:--RAGGAABGAAGG-
ARGAGGMCAAAATGW

AT/dmmpmm(Papatsenko)/fly

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:RAGGAABGAAGG
-ATGAACGAAT-

TBX21/MA0690.1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:forward strand
Alignment:RAGGAABGAAGG
AAGGTGTGAA--

ZmHOX2a(1)(HD-HOX)/Zea mays/AthaMap

Match Rank:8
Score:0.55
Offset:-1
Orientation:reverse strand
Alignment:-RAGGAABGAAGG
TTAGGAC------

E2F6/MA0471.1/Jaspar

Match Rank:9
Score:0.55
Offset:1
Orientation:forward strand
Alignment:RAGGAABGAAGG
-GGGCGGGAAGG

Tcf7/MA0769.1/Jaspar

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:RAGGAABGAAGG
AAAGATCAAAGG