Motif Name	Consensus	P-value	Log P-value	q-value (Benjamini)	# of Target Sequences with Motif(of 45534)	% of Target Sequences with Motif	# of Background Sequences with Motif(of 74686)	% of Background Sequences with Motif
BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer	CNNBRGCGCCCCCTGSTGGC	1e-10536	-2.426e+04	0.0000	30426.0	66.82%	5795.6	7.76%
CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	AYAGTGCCMYCTRGTGGCCA	1e-10300	-2.372e+04	0.0000	28522.0	62.63%	4425.0	5.92%
CTCF-SatelliteElement(Zf?)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer	TGCAGTTCCMVNWRTGGCCA	1e-129	-2.982e+02	0.0000	2645.0	5.81%	2185.0	2.93%
Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer	CAAAGGTCAG	1e-44	-1.016e+02	0.0000	21289.0	46.75%	31829.8	42.61%
NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer	GCCATCTGTT	1e-37	-8.576e+01	0.0000	9896.0	21.73%	13950.5	18.68%
Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	CACAGCAGGGGG	1e-33	-7.608e+01	0.0000	8001.0	17.57%	11154.7	14.93%
Unknown3/Drosophila-Promoters/Homer	ACVAKCTGGCAGCGC	1e-14	-3.315e+01	0.0000	989.0	2.17%	1159.4	1.55%
THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer	GGTCANYTGAGGWCA	1e-5	-1.353e+01	0.0001	4211.0	9.25%	6315.5	8.46%
SeqBias: polyC-repeat	CCCCCCCCCC	1e-3	-8.586e+00	0.0080	45532.0	99.99%	74658.3	99.95%
E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	NVCACCTGBN	1e-3	-6.928e+00	0.0379	14697.0	32.27%	23466.2	31.42%
PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer	ADGGYAGYAGCATCT	1e-2	-6.418e+00	0.0574	4093.0	8.99%	6344.2	8.49%
SeqBias: G/A bias	RRRRRRRRRR	1e-2	-5.662e+00	0.1121	45536.0	100.00%	74679.1	99.98%
DPL-1(E2F)/cElegans-Adult-ChIP-Seq(modEncode)/Homer	TAGCGCGC	1e-2	-4.803e+00	0.2442	5788.0	12.71%	9141.9	12.24%
SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer	AVCAGCTG	1e-2	-4.685e+00	0.2551	34194.0	75.09%	55633.3	74.48%
ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	RGRACASNSTGTYCYB	1e-1	-3.292e+00	0.9592	3049.0	6.70%	4804.6	6.43%
YY1(Zf)/Promoter/Homer	CAAGATGGCGGC	1e-1	-2.495e+00	1.0000	723.0	1.59%	1109.0	1.48%
EFL-1(E2F)/cElegans-L1-EFL1-ChIP-Seq(modEncode)/Homer	TGCAARYGCGCTCYA	1e0	-2.163e+00	1.0000	177.0	0.39%	257.9	0.35%
LIN-15B(Zf)/cElegans-L3-LIN15B-ChIP-Seq(modEncode)/Homer	CARTGGAGCGCRYTTGCATT	1e0	-1.542e+00	1.0000	43.0	0.09%	59.4	0.08%
ZNF528(Zf)/HEK293-ZNF528.GFP-ChIP-Seq(GSE58341)/Homer	AGAAATGACTTCCCT	1e0	-1.367e+00	1.0000	51.0	0.11%	73.6	0.10%
REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer	GGMGCTGTCCATGGTGCTGA	1e0	-1.343e+00	1.0000	81.0	0.18%	120.9	0.16%
SeqBias: GCW-triplet	GCWGCWGCWGCW	1e0	-1.318e+00	1.0000	45536.0	100.00%	74690.7	99.99%
ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer	GARTGGTCATCGCCC	1e0	-1.097e+00	1.0000	556.0	1.22%	890.4	1.19%
ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer	GNCTGTASTRNTGBCTCHTT	1e0	-8.624e-01	1.0000	211.0	0.46%	339.5	0.45%
n-Myc(bHLH)/mES-nMyc-ChIP-Seq(GSE11431)/Homer	VRCCACGTGG	1e0	-7.501e-01	1.0000	7130.0	15.66%	11683.5	15.64%
NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WNTGTTTRYTTTGGCA	1e0	-7.424e-01	1.0000	324.0	0.71%	528.6	0.71%
OCT:OCT(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	ATGAATATTCATGAG	1e0	-5.657e-01	1.0000	48.0	0.11%	80.8	0.11%
LXRE(NR),DR4/RAW-LXRb.biotin-ChIP-Seq(GSE21512)/Homer	RGGTTACTANAGGTCA	1e0	-5.340e-01	1.0000	420.0	0.92%	697.2	0.93%
ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer	GRTGMTRGAGCC	1e0	-5.270e-01	1.0000	4933.0	10.83%	8122.9	10.87%
SeqBias: polyA-repeat	AAAAAAAAAA	1e0	-3.987e-01	1.0000	45366.0	99.62%	74425.7	99.64%
c-Myc(bHLH)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	VVCCACGTGG	1e0	-3.216e-01	1.0000	5356.0	11.76%	8870.5	11.88%
Unknown2/Arabidopsis-Promoters/Homer	AAACGACGTCGTTTT	1e0	-2.405e-01	1.0000	22.0	0.05%	43.1	0.06%
EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer	GGYAGCAYDTGCTDCCCNNN	1e0	-2.214e-01	1.0000	132.0	0.29%	236.4	0.32%
ZFP3(Zf)/HEK293-ZFP3.GFP-ChIP-Seq(GSE58341)/Homer	GGGTTTTGAAGGATGARTAGGAGTT	1e0	-1.478e-01	1.0000	14.0	0.03%	32.0	0.04%
DREF/Drosophila-Promoters/Homer	AVYTATCGATAD	1e0	-1.392e-01	1.0000	61.0	0.13%	118.2	0.16%
Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer	CCTGCTGAGH	1e0	-1.304e-01	1.0000	8484.0	18.63%	14117.8	18.90%
Tal1	CATCTG	1e0	-1.287e-01	1.0000	13068.0	28.70%	21670.1	29.01%
Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCHGATTAC	1e0	-1.226e-01	1.0000	103.0	0.23%	194.5	0.26%
Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATATTC	1e0	-1.208e-01	1.0000	496.0	1.09%	869.8	1.16%
GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer	NRGVACABNVTGTYCY	1e0	-1.165e-01	1.0000	1229.0	2.70%	2104.8	2.82%
RBFox2(?)/Heart-RBFox2-CLIP-Seq(GSE57926)/Homer	TGCATGCA	1e0	-9.953e-02	1.0000	16908.0	37.13%	28015.8	37.51%
PAX5(Paired,Homeobox),condensed/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GTCACGCTCSCTGM	1e0	-7.166e-02	1.0000	907.0	1.99%	1580.8	2.12%
Pax7(Paired,Homeobox)/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	TAATCAATTA	1e0	-7.078e-02	1.0000	484.0	1.06%	862.2	1.15%
FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong_et_al.)/Homer	AGGTCANTGACCTB	1e0	-6.796e-02	1.0000	3243.0	7.12%	5492.8	7.35%
SeqBias: A/T bias	WWWWWWWWWW	1e0	-4.974e-02	1.0000	41530.0	91.20%	68328.6	91.48%
ZNF41(Zf)/HEK293-ZNF41.GFP-ChIP-Seq(GSE58341)/Homer	CCTCATGGTGYCYTWYTCCCTTGTG	1e0	-3.643e-02	1.0000	164.0	0.36%	318.7	0.43%
Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer	NTAATTDGCYAATTANNWWD	1e0	-3.461e-02	1.0000	133.0	0.29%	263.6	0.35%
Trl(Zf)/S2-GAGAfactor-ChIP-Seq(GSE40646)/Homer	RGAGAGAG	1e0	-3.398e-02	1.0000	24392.0	53.57%	40415.1	54.11%
Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer	ACAGCTGTTN	1e0	-3.386e-02	1.0000	24127.0	52.98%	39981.5	53.53%
ZNF16(Zf)/HEK293-ZNF16.GFP-ChIP-Seq(GSE58341)/Homer	MACCTTCYATGGCTCCCTAKTGCCY	1e0	-3.071e-02	1.0000	59.0	0.13%	128.7	0.17%
Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer	AGGVNCCTTTGT	1e0	-2.905e-02	1.0000	7255.0	15.93%	12210.4	16.35%
Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer	VCAGCTGYTG	1e0	-2.531e-02	1.0000	10031.0	22.03%	16815.4	22.51%
E2F(E2F)/Hela-CellCycle-Expression/Homer	TTSGCGCGAAAA	1e0	-2.104e-02	1.0000	337.0	0.74%	633.0	0.85%
SeqBias: C/A-bias	MMMMMMMMMM	1e0	-2.079e-02	1.0000	45534.0	99.99%	74694.6	100.00%
GRE(NR),IR3/RAW264.7-GRE-ChIP-Seq(Unpublished)/Homer	VAGRACAKWCTGTYC	1e0	-1.761e-02	1.0000	1937.0	4.25%	3368.5	4.51%
Tcfcp2l1(CP2)/mES-Tcfcp2l1-ChIP-Seq(GSE11431)/Homer	NRAACCRGTTYRAACCRGYT	1e0	-1.488e-02	1.0000	1291.0	2.84%	2280.7	3.05%
ZNF165(Zf)/WHIM12-ZNF165-ChIP-Seq(GSE65937)/Homer	AAGGKGRCGCAGGCA	1e0	-1.371e-02	1.0000	1151.0	2.53%	2044.4	2.74%
Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer	NNVVCAGCTGBN	1e0	-9.999e-03	1.0000	15539.0	34.12%	25979.4	34.78%
Unknown1(NR/Ini-like)/Drosophila-Promoters/Homer	MYGGTCACACTG	1e0	-4.756e-03	1.0000	1784.0	3.92%	3153.6	4.22%
Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer	CCATTGTATGCAAAT	1e0	-3.571e-03	1.0000	849.0	1.86%	1558.5	2.09%
NRF(NRF)/Promoter/Homer	STGCGCATGCGC	1e0	-2.836e-03	1.0000	1762.0	3.87%	3131.3	4.19%
ZBTB33(Zf)/GM12878-ZBTB33-ChIP-Seq(GSE32465)/Homer	GGVTCTCGCGAGAAC	1e0	-1.451e-03	1.0000	261.0	0.57%	533.4	0.71%
TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer	YCWGGAATGY	1e0	-1.358e-03	1.0000	4183.0	9.19%	7250.7	9.71%
Unknown1/Arabidopsis-Promoters/Homer	RGGGTAWWWTHGTAA	1e0	-1.067e-03	1.0000	530.0	1.16%	1021.9	1.37%
Pho4(bHLH)/Yeast-Pho4-ChIP-Seq(GSE29506)/Homer	AAGCACGTGBGD	1e0	-1.025e-03	1.0000	1627.0	3.57%	2928.3	3.92%
p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer	ACATGCCCGGGCAT	1e0	-9.240e-04	1.0000	110.0	0.24%	254.6	0.34%
Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer	GGTTAAWCATTAA	1e0	-8.390e-04	1.0000	727.0	1.60%	1373.1	1.84%
GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer	CRGCTGBNGNSNNSAGATAA	1e0	-6.770e-04	1.0000	948.0	2.08%	1765.0	2.36%
ERE(NR),IR3/MCF7-ERa-ChIP-Seq(Unpublished)/Homer	VAGGTCACNSTGACC	1e0	-5.760e-04	1.0000	2213.0	4.86%	3946.2	5.28%
ZSCAN22(Zf)/HEK293-ZSCAN22.GFP-ChIP-Seq(GSE58341)/Homer	SMCAGTCWGAKGGAGGAGGC	1e0	-5.570e-04	1.0000	602.0	1.32%	1159.8	1.55%
ZNF675(Zf)/HEK293-ZNF675.GFP-ChIP-Seq(GSE58341)/Homer	ARGAGGMCAAAATGW	1e0	-5.240e-04	1.0000	1088.0	2.39%	2013.7	2.70%
OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer	ATGAATWATTCATGA	1e0	-4.570e-04	1.0000	67.0	0.15%	173.1	0.23%
GEI-11(Myb?)/cElegans-L4-GEI11-ChIP-Seq(modEncode)/Homer	CCGACAYYTYACGGG	1e0	-3.710e-04	1.0000	307.0	0.67%	633.0	0.85%
VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer	ARAGGTCANWGAGTTCANNN	1e0	-2.370e-04	1.0000	1615.0	3.55%	2943.8	3.94%
GFX(?)/Promoter/Homer	ATTCTCGCGAGA	1e0	-2.280e-04	1.0000	80.0	0.18%	204.3	0.27%
PGR(NR)/EndoStromal-PGR-ChIP-Seq(GSE69539)/Homer	AAGAACATWHTGTTC	1e0	-1.020e-04	1.0000	1741.0	3.82%	3180.0	4.26%
GATA(Zf),IR3/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NNNNNBAGATAWYATCTVHN	1e0	-9.200e-05	1.0000	852.0	1.87%	1631.6	2.18%
Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer	ANTTMRCASBNNNGTGYKAAN	1e0	-5.800e-05	1.0000	2228.0	4.89%	4032.5	5.40%
Zelda(Zf)/Embryo-zld-ChIP-Seq(GSE65441)/Homer	KBCTACCTGW	1e0	-4.400e-05	1.0000	3770.0	8.28%	6672.1	8.93%
GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer	CGTGGGTGGTCC	1e0	-4.200e-05	1.0000	952.0	2.09%	1821.4	2.44%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	RGGTCADNNAGAGGTCAV	1e0	-3.800e-05	1.0000	216.0	0.47%	485.1	0.65%
HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer	BSTTCTRGAABVTTCYAGAA	1e0	-2.400e-05	1.0000	1235.0	2.71%	2329.7	3.12%
FOXA1:AR(Forkhead,NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer	AGTAAACAAAAAAGAACAND	1e0	-2.100e-05	1.0000	602.0	1.32%	1206.4	1.62%
Mouse_Recombination_Hotspot(Zf)/Testis-DMC1-ChIP-Seq(GSE24438)/Homer	ACTYKNATTCGTGNTACTTC	1e0	-1.800e-05	1.0000	373.0	0.82%	788.7	1.06%
TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer	CCWGGAATGY	1e0	-1.500e-05	1.0000	5738.0	12.60%	10035.8	13.44%
Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer	AGGTGHCAGACA	1e0	-1.500e-05	1.0000	1639.0	3.60%	3044.9	4.08%
Max(bHLH)/K562-Max-ChIP-Seq(GSE31477)/Homer	RCCACGTGGYYN	1e0	-1.400e-05	1.0000	6462.0	14.19%	11257.4	15.07%
Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer	YCTTTGTTCC	1e0	-1.300e-05	1.0000	5957.0	13.08%	10409.5	13.94%
HEB(bHLH)/mES-Heb-ChIP-Seq(GSE53233)/Homer	VCAGCTGBNN	1e0	-1.100e-05	1.0000	18320.0	40.23%	30974.9	41.47%
PIF4(bHLH)/Seedling-PIF4-ChIP-Seq(GSE35315)/Homer	NNBCACGTGN	1e0	-1.100e-05	1.0000	11371.0	24.97%	19472.8	26.07%
TATA-box/Drosophila-Promoters/Homer	CTATAAAAGCSV	1e0	-1.000e-05	1.0000	386.0	0.85%	818.9	1.10%
GATA3(Zf),DR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATGKDGAGATAAG	1e0	-1.000e-05	1.0000	477.0	1.05%	987.1	1.32%
ZNF189(Zf)/HEK293-ZNF189.GFP-ChIP-Seq(GSE58341)/Homer	TGGAACAGMA	1e0	-7.000e-06	1.0000	7792.0	17.11%	13513.5	18.09%
PIF5ox(bHLH)/Arabidopsis-PIF5ox-ChIP-Seq(GSE35062)/Homer	BCACGTGVDN	1e0	-7.000e-06	1.0000	9634.0	21.16%	16595.2	22.22%
Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	CTGGCAGSCTGCCA	1e0	-6.000e-06	1.0000	3781.0	8.30%	6750.0	9.04%
Tgif2(Homeobox)/mES-Tgif2-ChIP-Seq(GSE55404)/Homer	TGTCANYT	1e0	-5.000e-06	1.0000	24880.0	54.64%	41781.4	55.94%
Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer	RCCATMTGTT	1e0	-4.000e-06	1.0000	17128.0	37.61%	29060.7	38.91%
GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	NAGATWNBNATCTNN	1e0	-3.000e-06	1.0000	381.0	0.84%	822.5	1.10%
HIF-1a(bHLH)/MCF7-HIF1a-ChIP-Seq(GSE28352)/Homer	TACGTGCV	1e0	-1.000e-06	1.0000	1692.0	3.72%	3192.3	4.27%
Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer	GTTGCCATGGCAACM	1e0	-1.000e-06	1.0000	742.0	1.63%	1502.8	2.01%
NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer	CYTGGCABNSTGCCAR	1e0	-1.000e-06	1.0000	3073.0	6.75%	5590.6	7.48%
TOD6?/SacCer-Promoters/Homer	GCGATGAGMT	1e0	-1.000e-06	1.0000	1187.0	2.61%	2303.3	3.08%
HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer	GYCATCMATCAT	1e0	-0.000e+00	1.0000	551.0	1.21%	1157.7	1.55%
Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer	CGGTCACSCCAC	1e0	-0.000e+00	1.0000	1077.0	2.37%	2113.3	2.83%
NRF1(NRF)/MCF7-NRF1-ChIP-Seq(Unpublished)/Homer	CTGCGCATGCGC	1e0	-0.000e+00	1.0000	1215.0	2.67%	2360.2	3.16%
ZNF317(Zf)/HEK293-ZNF317.GFP-ChIP-Seq(GSE58341)/Homer	GTCWGCTGTYYCTCT	1e0	-0.000e+00	1.0000	595.0	1.31%	1248.3	1.67%
ABF1/SacCer-Promoters/Homer	CGTRNAAARTGA	1e0	-0.000e+00	1.0000	1161.0	2.55%	2276.5	3.05%
AARE(HLH)/mES-cMyc-ChIP-Seq/Homer	GATTGCATCA	1e0	-0.000e+00	1.0000	426.0	0.94%	936.4	1.25%
ZNF519(Zf)/HEK293-ZNF519.GFP-ChIP-Seq(GSE58341)/Homer	GAGSCCGAGC	1e0	-0.000e+00	1.0000	1797.0	3.95%	3412.8	4.57%
GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATSTNDNNDSAGATAASN	1e0	-0.000e+00	1.0000	603.0	1.32%	1270.7	1.70%
ZNF264(Zf)/HEK293-ZNF264.GFP-ChIP-Seq(GSE58341)/Homer	RGGGCACTAACY	1e0	-0.000e+00	1.0000	5626.0	12.35%	10002.7	13.39%
TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer	CCWGGAATGY	1e0	-0.000e+00	1.0000	3445.0	7.57%	6277.0	8.40%
Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer	AGGTGTCA	1e0	-0.000e+00	1.0000	25874.0	56.82%	43583.0	58.35%
PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer	GSCTGTCACTCA	1e0	-0.000e+00	1.0000	658.0	1.44%	1373.4	1.84%
RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer	CGGTTGCCATGGCAAC	1e0	-0.000e+00	1.0000	665.0	1.46%	1388.6	1.86%
Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	HTTTCCCASG	1e0	-0.000e+00	1.0000	12305.0	27.02%	21229.9	28.42%
HNF6(Homeobox)/Liver-Hnf6-ChIP-Seq(ERP000394)/Homer	NTATYGATCH	1e0	-0.000e+00	1.0000	2951.0	6.48%	5437.5	7.28%
MafF(bZIP)/HepG2-MafF-ChIP-Seq(GSE31477)/Homer	HWWGTCAGCAWWTTT	1e0	-0.000e+00	1.0000	1538.0	3.38%	2967.9	3.97%
ZNF136(Zf)/HEK293-ZNF136.GFP-ChIP-Seq(GSE58341)/Homer	YTKGATAHAGTATTCTWGGTNGGCA	1e0	-0.000e+00	1.0000	462.0	1.01%	1014.3	1.36%
TCFL2(HMG)/K562-TCF7L2-ChIP-Seq(GSE29196)/Homer	ACWTCAAAGG	1e0	-0.000e+00	1.0000	575.0	1.26%	1227.1	1.64%
SFP1/SacCer-Promoters/Homer	DDAAAAATTTTY	1e0	-0.000e+00	1.0000	410.0	0.90%	916.1	1.23%
p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer	RRCATGYCYRGRCATGYYYN	1e0	-0.000e+00	1.0000	667.0	1.46%	1401.6	1.88%
p53(p53)/Saos-p53-ChIP-Seq/Homer	RRCATGYCYRGRCATGYYYN	1e0	-0.000e+00	1.0000	667.0	1.46%	1401.6	1.88%
Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer	VNRVCAGCTGGY	1e0	-0.000e+00	1.0000	10305.0	22.63%	17920.0	23.99%
HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer	TTCTAGAABNTTCTA	1e0	-0.000e+00	1.0000	1626.0	3.57%	3142.7	4.21%
Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer	YTAATYNRATTA	1e0	-0.000e+00	1.0000	1924.0	4.23%	3670.2	4.91%
Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer	GGGGCTYGKCTGGGA	1e0	-0.000e+00	1.0000	1571.0	3.45%	3049.7	4.08%
Unknown4/Drosophila-Promoters/Homer	AAAAATACCRMA	1e0	-0.000e+00	1.0000	581.0	1.28%	1252.4	1.68%
RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer	AAYTAGGTCA	1e0	-0.000e+00	1.0000	799.0	1.75%	1658.5	2.22%
Tbx20(T-box)/Heart-Tbx20-ChIP-Seq(GSE29636)/Homer	GGTGYTGACAGS	1e0	-0.000e+00	1.0000	1704.0	3.74%	3291.9	4.41%
SeqBias: CG bias	SSSSSSSSSS	1e0	-0.000e+00	1.0000	42783.0	93.95%	70764.0	94.74%
MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer	GCTGASTCAGCA	1e0	-0.000e+00	1.0000	2060.0	4.52%	3935.7	5.27%
Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer	TGATTRATGGCY	1e0	-0.000e+00	1.0000	1145.0	2.51%	2315.8	3.10%
RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer	GGGRAARRGRMCAGMTG	1e0	-0.000e+00	1.0000	2564.0	5.63%	4837.5	6.48%
E2F7(E2F)/Hela-E2F7-ChIP-Seq(GSE32673)/Homer	VDTTTCCCGCCA	1e0	-0.000e+00	1.0000	683.0	1.50%	1469.3	1.97%
Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer	HTGCTGAGTCAT	1e0	-0.000e+00	1.0000	392.0	0.86%	915.2	1.23%
MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer	RTCATGTGAC	1e0	-0.000e+00	1.0000	7800.0	17.13%	13822.3	18.50%
PRDM14(Zf)/H1-PRDM14-ChIP-Seq(GSE22767)/Homer	RGGTCTCTAACY	1e0	-0.000e+00	1.0000	2490.0	5.47%	4721.9	6.32%
GFY-Staf(?,Zf)/Promoter/Homer	RACTACAATTCCCAGAAKGC	1e0	-0.000e+00	1.0000	648.0	1.42%	1407.5	1.88%
Reverb(NR),DR2/RAW-Reverba.biotin-ChIP-Seq(GSE45914)/Homer	GTRGGTCASTGGGTCA	1e0	-0.000e+00	1.0000	982.0	2.16%	2027.4	2.71%
Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer	SCTGTCAMTCAN	1e0	-0.000e+00	1.0000	1942.0	4.26%	3906.4	5.23%
Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer	NATGASTCABNN	1e0	-0.000e+00	1.0000	2255.0	4.95%	5722.9	7.66%
Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer	GYMATAAAAH	1e0	-0.000e+00	1.0000	4212.0	9.25%	8220.7	11.01%
Atf2(bZIP)/3T3L1-Atf2-ChIP-Seq(GSE56872)/Homer	NRRTGACGTCAT	1e0	-0.000e+00	1.0000	2006.0	4.41%	4470.9	5.99%
ZNF692(Zf)/HEK293-ZNF692.GFP-ChIP-Seq(GSE58341)/Homer	GTGGGCCCCA	1e0	-0.000e+00	1.0000	1000.0	2.20%	2124.9	2.84%
FHY3(FAR1)/Arabidopsis-FHY3-ChIP-Seq(GSE30711)/Homer	HHCACGCGCBTN	1e0	-0.000e+00	1.0000	2000.0	4.39%	3878.2	5.19%
EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer	GTCCCCWGGGGA	1e0	-0.000e+00	1.0000	9868.0	21.67%	17855.0	23.90%
TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer	GAGGTCAAAGGTCA	1e0	-0.000e+00	1.0000	821.0	1.80%	1759.8	2.36%
Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer	CCWTTGTYYB	1e0	-0.000e+00	1.0000	11442.0	25.13%	20613.7	27.60%
Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer	SSCMATWAAA	1e0	-0.000e+00	1.0000	3613.0	7.93%	7390.6	9.89%
Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer	KTGACCTTGA	1e0	-0.000e+00	1.0000	5121.0	11.25%	9591.4	12.84%
FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer	WAAGTAAACA	1e0	-0.000e+00	1.0000	8401.0	18.45%	16087.2	21.54%
ETS(ETS)/Promoter/Homer	AACCGGAAGT	1e0	-0.000e+00	1.0000	2774.0	6.09%	8112.4	10.86%
Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer	VGCTGWCAVB	1e0	-0.000e+00	1.0000	13901.0	30.53%	25914.1	34.69%
Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer	TGACCTTTNCNT	1e0	-0.000e+00	1.0000	1107.0	2.43%	2394.3	3.21%
SeqBias: GA-repeat	GAGAGAGAGA	1e0	-0.000e+00	1.0000	37930.0	83.29%	65829.5	88.13%
Unknown4/Arabidopsis-Promoters/Homer	CKTCKTCTTY	1e0	-0.000e+00	1.0000	6823.0	14.98%	13290.8	17.79%
PQM-1(?)/cElegans-L3-ChIP-Seq(modEncode)/Homer	ACTGATAAGA	1e0	-0.000e+00	1.0000	1976.0	4.34%	3968.7	5.31%
EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer	DGTCCCYRGGGA	1e0	-0.000e+00	1.0000	1856.0	4.08%	4088.6	5.47%
ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer	AVCCGGAAGT	1e0	-0.000e+00	1.0000	4394.0	9.65%	11811.6	15.81%
Pho2(bHLH)/Yeast-Pho2-ChIP-Seq(GSE29506)/Homer	CCCACGTGCT	1e0	-0.000e+00	1.0000	3396.0	7.46%	6517.5	8.73%
DMRT1(DM)/Testis-DMRT1-ChIP-Seq(GSE64892)/Homer	TWGHWACAWTGTWDC	1e0	-0.000e+00	1.0000	1429.0	3.14%	3139.4	4.20%
Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer	GCTATTTTTAGC	1e0	-0.000e+00	1.0000	938.0	2.06%	2508.6	3.36%
SUT1?/SacCer-Promoters/Homer	CCCCGCGC	1e0	-0.000e+00	1.0000	35698.0	78.39%	61644.4	82.53%
BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer	GNCACGTG	1e0	-0.000e+00	1.0000	15434.0	33.89%	26669.0	35.70%
Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer	AWWNTGCTGAGTCAT	1e0	-0.000e+00	1.0000	379.0	0.83%	911.0	1.22%
Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer	BCCATTGTTC	1e0	-0.000e+00	1.0000	5878.0	12.91%	10628.0	14.23%
PHA-4(Forkhead)/cElegans-Embryos-PHA4-ChIP-Seq(modEncode)/Homer	KTGTTTGC	1e0	-0.000e+00	1.0000	23342.0	51.26%	41706.6	55.84%
CRE(bZIP)/Promoter/Homer	CSGTGACGTCAC	1e0	-0.000e+00	1.0000	1509.0	3.31%	3179.8	4.26%
FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer	WAAGTAAACA	1e0	-0.000e+00	1.0000	6918.0	15.19%	13364.0	17.89%
Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGMATATDC	1e0	-0.000e+00	1.0000	6478.0	14.23%	12132.8	16.24%
bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer	KCACGTGMCN	1e0	-0.000e+00	1.0000	2272.0	4.99%	4456.8	5.97%
CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan_et_al.)/Homer	CCATATATGGNM	1e0	-0.000e+00	1.0000	1934.0	4.25%	3815.5	5.11%
ZBTB12(Zf)/HEK293-ZBTB12.GFP-ChIP-Seq(GSE58341)/Homer	NGNTCTAGAACCNGV	1e0	-0.000e+00	1.0000	3858.0	8.47%	7194.6	9.63%
CEBP:AP1(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	DRTGTTGCAA	1e0	-0.000e+00	1.0000	4424.0	9.72%	9253.0	12.39%
GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer	AGATAASR	1e0	-0.000e+00	1.0000	9205.0	20.21%	18534.1	24.81%
Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer	NNNVCTGWGYAAACASN	1e0	-0.000e+00	1.0000	8327.0	18.29%	14889.7	19.93%
Atf7(bZIP)/3T3L1-Atf7-ChIP-Seq(GSE56872)/Homer	NGRTGACGTCAY	1e0	-0.000e+00	1.0000	2873.0	6.31%	6105.8	8.17%
CES-1(Homeobox)/cElegans-L1-CES1-ChIP-Seq(modEncode)/Homer	AAATTSAATTTN	1e0	-0.000e+00	1.0000	2893.0	6.35%	5457.5	7.31%
GSC(Homeobox)/FrogEmbryos-GSC-ChIP-Seq(DRA000576)/Homer	RGGATTAR	1e0	-0.000e+00	1.0000	7420.0	16.29%	14884.4	19.93%
Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer	SAGATAAGRV	1e0	-0.000e+00	1.0000	3524.0	7.74%	7503.9	10.05%
Unknown2/Drosophila-Promoters/Homer	CATCMCTA	1e0	-0.000e+00	1.0000	10629.0	23.34%	19199.7	25.70%
ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer	AACCGGAAGT	1e0	-0.000e+00	1.0000	11060.0	24.29%	26380.5	35.32%
Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer	BBCTTATCTS	1e0	-0.000e+00	1.0000	3959.0	8.69%	8410.9	11.26%
PAX5(Paired,Homeobox)/GM12878-PAX5-ChIP-Seq(GSE32465)/Homer	GCAGCCAAGCRTGACH	1e0	-0.000e+00	1.0000	2912.0	6.39%	6109.4	8.18%
NFY(CCAAT)/Promoter/Homer	RGCCAATSRG	1e0	-0.000e+00	1.0000	5282.0	11.60%	10589.8	14.18%
GFY(?)/Promoter/Homer	ACTACAATTCCC	1e0	-0.000e+00	1.0000	544.0	1.19%	1226.1	1.64%
PABPC1(?)/MEL-PABC1-CLIP-Seq(GSE69755)/Homer	HAATAAAGNN	1e0	-0.000e+00	1.0000	12519.0	27.49%	22548.7	30.19%
IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer	GAAASYGAAASY	1e0	-0.000e+00	1.0000	594.0	1.30%	2736.1	3.66%
CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer	GHCACGTG	1e0	-0.000e+00	1.0000	4250.0	9.33%	8102.5	10.85%
Atf4(bZIP)/MEF-Atf4-ChIP-Seq(GSE35681)/Homer	MTGATGCAAT	1e0	-0.000e+00	1.0000	1397.0	3.07%	3092.3	4.14%
ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer	WDNCTGGGCA	1e0	-0.000e+00	1.0000	11664.0	25.61%	20883.4	27.96%
RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer	SAAACCACAG	1e0	-0.000e+00	1.0000	6724.0	14.77%	14287.3	19.13%
TATA-box/SacCer-Promoters/Homer	BBHWTATATA	1e0	-0.000e+00	1.0000	2773.0	6.09%	6149.6	8.23%
Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer	SCCTAGCAACAG	1e0	-0.000e+00	1.0000	2917.0	6.41%	6060.7	8.11%
NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer	YTGCCAAG	1e0	-0.000e+00	1.0000	14035.0	30.82%	24707.3	33.08%
E2F1(E2F)/Hela-E2F1-ChIP-Seq(GSE22478)/Homer	CWGGCGGGAA	1e0	-0.000e+00	1.0000	1416.0	3.11%	2948.2	3.95%
Unknown3/Arabidopsis-Promoters/Homer	AYTAAACCGG	1e0	-0.000e+00	1.0000	1084.0	2.38%	2288.1	3.06%
PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	AGAGGAAGTG	1e0	-0.000e+00	1.0000	4003.0	8.79%	12287.5	16.45%
Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer	TGCTGAGTCA	1e0	-0.000e+00	1.0000	1390.0	3.05%	3250.1	4.35%
SPCH(bHLH)/Seedling-SPCH-ChIP-Seq(GSE57497)/Homer	WNBCACGTGA	1e0	-0.000e+00	1.0000	7979.0	17.52%	14852.8	19.88%
ZNF467(Zf)/HEK293-ZNF467.GFP-ChIP-Seq(GSE58341)/Homer	TGGGGAAGGGCM	1e0	-0.000e+00	1.0000	6903.0	15.16%	15484.7	20.73%
HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer	NCYAATAAAA	1e0	-0.000e+00	1.0000	6626.0	14.55%	12318.6	16.49%
NPAS2(bHLH)/Liver-NPAS2-ChIP-Seq(GSE39860)/Homer	KCCACGTGAC	1e0	-0.000e+00	1.0000	8934.0	19.62%	16290.7	21.81%
ZBTB18(Zf)/HEK293-ZBTB18.GFP-ChIP-Seq(GSE58341)/Homer	AACATCTGGA	1e0	-0.000e+00	1.0000	4137.0	9.08%	8419.4	11.27%
Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer	TATGCWAATBAV	1e0	-0.000e+00	1.0000	1615.0	3.55%	4513.7	6.04%
Foxh1(Forkhead)/hESC-FOXH1-ChIP-Seq(GSE29422)/Homer	NNTGTGGATTSS	1e0	-0.000e+00	1.0000	3966.0	8.71%	7384.8	9.89%
RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer	TAGGGCAAAGGTCA	1e0	-0.000e+00	1.0000	8570.0	18.82%	16942.6	22.68%
ZFX(Zf)/mES-Zfx-ChIP-Seq(GSE11431)/Homer	AGGCCTRG	1e0	-0.000e+00	1.0000	10302.0	22.62%	19333.0	25.88%
KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer	GGGGGTGTGTCC	1e0	-0.000e+00	1.0000	6116.0	13.43%	14062.0	18.83%
EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer	NWGGGTGTGGCY	1e0	-0.000e+00	1.0000	1735.0	3.81%	4038.5	5.41%
Tcf4(HMG)/Hct116-Tcf4-ChIP-Seq(SRA012054)/Homer	ASATCAAAGGVA	1e0	-0.000e+00	1.0000	3024.0	6.64%	6151.7	8.24%
NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	SARTGGAAAAWRTGAGTCAB	1e0	-0.000e+00	1.0000	1086.0	2.38%	2426.5	3.25%
DMRT6(DM)/Testis-DMRT6-ChIP-Seq(GSE60440)/Homer	YDGHTACAWTGTADC	1e0	-0.000e+00	1.0000	1268.0	2.78%	2783.0	3.73%
RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer	NWAACCACADNN	1e0	-0.000e+00	1.0000	7730.0	16.98%	16179.1	21.66%
Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer	BTBRAGTGSN	1e0	-0.000e+00	1.0000	16875.0	37.06%	29310.7	39.24%
USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer	SGTCACGTGR	1e0	-0.000e+00	1.0000	3581.0	7.86%	6858.1	9.18%
Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer	ASWTCAAAGG	1e0	-0.000e+00	1.0000	1665.0	3.66%	3462.9	4.64%
p63(p53)/Keratinocyte-p63-ChIP-Seq(GSE17611)/Homer	NNDRCATGYCYNRRCATGYH	1e0	-0.000e+00	1.0000	2817.0	6.19%	5353.7	7.17%
RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer	AGGTCAAGGTCA	1e0	-0.000e+00	1.0000	1214.0	2.67%	3036.0	4.06%
JunD(bZIP)/K562-JunD-ChIP-Seq/Homer	ATGACGTCATCN	1e0	-0.000e+00	1.0000	494.0	1.08%	1394.0	1.87%
Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer	YCATYAATCA	1e0	-0.000e+00	1.0000	5737.0	12.60%	11161.2	14.94%
E-box(bHLH)/Promoter/Homer	SSGGTCACGTGA	1e0	-0.000e+00	1.0000	541.0	1.19%	1244.4	1.67%
caudal(Homeobox)/Drosophila-Embryos-ChIP-Chip(modEncode)/Homer	GGYCATAAAW	1e0	-0.000e+00	1.0000	4710.0	10.34%	9252.5	12.39%
OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAACAATG	1e0	-0.000e+00	1.0000	905.0	1.99%	2081.2	2.79%
ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer	AGTTTCASTTTC	1e0	-0.000e+00	1.0000	334.0	0.73%	1545.4	2.07%
Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer	RAACAATGGN	1e0	-0.000e+00	1.0000	7181.0	15.77%	12974.4	17.37%
MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer	TGCTGACTCA	1e0	-0.000e+00	1.0000	6973.0	15.31%	12703.7	17.01%
Oct6(POU,Homeobox)/NPC-Oct6-ChIP-Seq(GSE35496)/Homer	WATGCAAATGAG	1e0	-0.000e+00	1.0000	2209.0	4.85%	5706.6	7.64%
NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma_et_al.)/Homer	ATTTTCCATT	1e0	-0.000e+00	1.0000	5672.0	12.46%	11394.4	15.25%
Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer	GGGGGGGG	1e0	-0.000e+00	1.0000	10609.0	23.30%	23497.9	31.46%
MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer	RRCAGCTGYTSY	1e0	-0.000e+00	1.0000	6847.0	15.04%	13228.8	17.71%
Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer	CVGTSCTCCC	1e0	-0.000e+00	1.0000	15117.0	33.20%	26991.6	36.14%
Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer	GTCATGCHTGRCTGS	1e0	-0.000e+00	1.0000	2694.0	5.92%	5395.5	7.22%
HLH-1(bHLH)/cElegans-Embryo-HLH1-ChIP-Seq(modEncode)/Homer	RACAGCTGTTBH	1e0	-0.000e+00	1.0000	6340.0	13.92%	11983.4	16.04%
Elk1(ETS)/Hela-Elk1-ChIP-Seq(GSE31477)/Homer	HACTTCCGGY	1e0	-0.000e+00	1.0000	4717.0	10.36%	12189.5	16.32%
SeqBias: TA-repeat	TATATATATA	1e0	-0.000e+00	1.0000	16869.0	37.04%	30731.7	41.14%
IBL1(bHLH)/Seedling-IBL1-ChIP-Seq(GSE51120)/Homer	CACGTGCC	1e0	-0.000e+00	1.0000	13117.0	28.81%	24152.8	32.33%
IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer	ACTGAAACCA	1e0	-0.000e+00	1.0000	2979.0	6.54%	7197.2	9.64%
Initiator/Drosophila-Promoters/Homer	NTCAGTYG	1e0	-0.000e+00	1.0000	17336.0	38.07%	32248.2	43.17%
ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer	AGGCCTAG	1e0	-0.000e+00	1.0000	13896.0	30.52%	26242.3	35.13%
FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer	NYYTGTTTACHN	1e0	-0.000e+00	1.0000	2607.0	5.73%	5689.6	7.62%
FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer	TRTTTACTTW	1e0	-0.000e+00	1.0000	7405.0	16.26%	14088.9	18.86%
Egr2(Zf)/Thymocytes-Egr2-ChIP-Seq(GSE34254)/Homer	NGCGTGGGCGGR	1e0	-0.000e+00	1.0000	1461.0	3.21%	2969.1	3.97%
SeqBias: CG-repeat	CGCGCGCGCG	1e0	-0.000e+00	1.0000	8233.0	18.08%	16763.0	22.44%
c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer	VCCACGTG	1e0	-0.000e+00	1.0000	3584.0	7.87%	6714.1	8.99%
SOC1(MADS)/Seedling-SOC1-ChIP-Seq(GSE45846)/Homer	TWCCAWWTWTGG	1e0	-0.000e+00	1.0000	2234.0	4.91%	4345.1	5.82%
Oct2(POU,Homeobox)/Bcell-Oct2-ChIP-Seq(GSE21512)/Homer	ATATGCAAAT	1e0	-0.000e+00	1.0000	1560.0	3.43%	4265.4	5.71%
E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer	DNRCAGCTGY	1e0	-0.000e+00	1.0000	14161.0	31.10%	24987.6	33.45%
MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer	GGCVGTTR	1e0	-0.000e+00	1.0000	14230.0	31.25%	25699.8	34.41%
SEP3(MADS)/Arabidoposis-Flower-Sep3-ChIP-Seq/Homer	CCAAAAAGGG	1e0	-0.000e+00	1.0000	7564.0	16.61%	15568.0	20.84%
KANADI1(Myb)/Seedling-KAN1-ChIP-Seq(GSE48081)/Homer	ARGAATAWWN	1e0	-0.000e+00	1.0000	6687.0	14.68%	13100.7	17.54%
Unknown6/Drosophila-Promoters/Homer	AATTTTAAAA	1e0	-0.000e+00	1.0000	5674.0	12.46%	10497.6	14.05%
Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer	DATGASTCATHN	1e0	-0.000e+00	1.0000	4164.0	9.14%	9992.4	13.38%
KLF14(Zf)/HEK293-KLF14.GFP-ChIP-Seq(GSE58341)/Homer	RGKGGGCGKGGC	1e0	-0.000e+00	1.0000	14565.0	31.98%	29811.9	39.91%
Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer	BAACAGCTGT	1e0	-0.000e+00	1.0000	5924.0	13.01%	12130.7	16.24%
Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	MACAGGAAGT	1e0	-0.000e+00	1.0000	2650.0	5.82%	7737.7	10.36%
Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer	CYTGTTTACWYW	1e0	-0.000e+00	1.0000	5454.0	11.98%	10490.7	14.04%
RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer	GCTGTGGTTW	1e0	-0.000e+00	1.0000	6407.0	14.07%	13266.9	17.76%
ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	8539.0	18.75%	21334.3	28.56%
AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer	CCAGGAACAG	1e0	-0.000e+00	1.0000	28788.0	63.22%	49915.9	66.83%
PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer	ACTTTCACTTTC	1e0	-0.000e+00	1.0000	3438.0	7.55%	8568.2	11.47%
Otx2(Homeobox)/EpiLC-Otx2-ChIP-Seq(GSE56098)/Homer	NYTAATCCYB	1e0	-0.000e+00	1.0000	5185.0	11.39%	10629.7	14.23%
SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer	ASWTCCTGBT	1e0	-0.000e+00	1.0000	8376.0	18.39%	17998.5	24.10%
KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer	DGGGYGKGGC	1e0	-0.000e+00	1.0000	10850.0	23.83%	22958.8	30.74%
ZNF143|STAF(Zf)/CUTLL-ZNF143-ChIP-Seq(GSE29600)/Homer	ATTTCCCAGVAKSCY	1e0	-0.000e+00	1.0000	3710.0	8.15%	7117.0	9.53%
Klf9(Zf)/GBM-Klf9-ChIP-Seq(GSE62211)/Homer	GCCACRCCCACY	1e0	-0.000e+00	1.0000	3600.0	7.91%	8193.3	10.97%
GAGA-repeat/SacCer-Promoters/Homer	CTYTCTYTCTCTCTC	1e0	-0.000e+00	1.0000	28043.0	61.58%	50985.0	68.26%
SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer	AAAGRGGAAGTG	1e0	-0.000e+00	1.0000	1658.0	3.64%	6354.8	8.51%
Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer	AAGCACTTAA	1e0	-0.000e+00	1.0000	18514.0	40.66%	33265.4	44.53%
STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer	NYTTCCWGGAAR	1e0	-0.000e+00	1.0000	6717.0	14.75%	12948.4	17.33%
Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer	RSCACTYRAG	1e0	-0.000e+00	1.0000	23342.0	51.26%	40301.4	53.95%
Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer	NNATGASTCATH	1e0	-0.000e+00	1.0000	3447.0	7.57%	8497.3	11.38%
HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer	GGCCATAAATCA	1e0	-0.000e+00	1.0000	3851.0	8.46%	7440.9	9.96%
Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer	CYAAAAATAG	1e0	-0.000e+00	1.0000	2328.0	5.11%	5459.5	7.31%
ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer	ACAGGAAGTG	1e0	-0.000e+00	1.0000	12675.0	27.83%	28746.5	38.48%
Hoxc9(Homeobox)/Ainv15-Hoxc9-ChIP-Seq(GSE21812)/Homer	GGCCATAAATCA	1e0	-0.000e+00	1.0000	2924.0	6.42%	5747.6	7.69%
HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer	CARRGKBCAAAGTYCA	1e0	-0.000e+00	1.0000	3784.0	8.31%	7122.8	9.54%
ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer	AGGAARCAGCTG	1e0	-0.000e+00	1.0000	730.0	1.60%	1751.4	2.34%
Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer	TWGTCTGV	1e0	-0.000e+00	1.0000	22643.0	49.72%	40951.8	54.82%
Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer	MAATCACTGC	1e0	-0.000e+00	1.0000	4589.0	10.08%	9419.6	12.61%
STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer	TTCCKNAGAA	1e0	-0.000e+00	1.0000	3805.0	8.36%	7109.8	9.52%
bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer	NAGTTTCABTHTGACTNW	1e0	-0.000e+00	1.0000	2792.0	6.13%	7480.3	10.01%
Tcf21(bHLH)/ArterySmoothMuscle-Tcf21-ChIP-Seq(GSE61369)/Homer	NAACAGCTGG	1e0	-0.000e+00	1.0000	8151.0	17.90%	16031.2	21.46%
EGL-5(Homeobox)/cElegans-L3-EGL5-ChIP-Seq(modEncode)/Homer	ATTTAATGGG	1e0	-0.000e+00	1.0000	9064.0	19.90%	16893.6	22.62%
GAGA-repeat/Arabidopsis-Promoters/Homer	CTCTCTCTCY	1e0	-0.000e+00	1.0000	10393.0	22.82%	21593.1	28.91%
Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer	ATTAACACCT	1e0	-0.000e+00	1.0000	14845.0	32.60%	27644.9	37.01%
Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)	NNAYTTCCTGHN	1e0	-0.000e+00	1.0000	7473.0	16.41%	19032.6	25.48%
LIN-39(Homeobox)/cElegans.L3-LIN39-ChIP-Seq(modEncode)/Homer	ATGATTRATG	1e0	-0.000e+00	1.0000	6932.0	15.22%	13521.5	18.10%
AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer	TGGCAGTTGG	1e0	-0.000e+00	1.0000	12750.0	28.00%	22968.4	30.75%
AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer	VTGACTCATC	1e0	-0.000e+00	1.0000	4833.0	10.61%	11116.7	14.88%
Tgif1(Homeobox)/mES-Tgif1-ChIP-Seq(GSE55404)/Homer	YTGWCADY	1e0	-0.000e+00	1.0000	21477.0	47.16%	39149.6	52.41%
Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	KGTTGCCATGGCAA	1e0	-0.000e+00	1.0000	1522.0	3.34%	3073.6	4.11%
Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan_et_al.)/Homer	CTGTTTAC	1e0	-0.000e+00	1.0000	13664.0	30.01%	26093.2	34.93%
TATA-Box(TBP)/Promoter/Homer	CCTTTTAWAGSC	1e0	-0.000e+00	1.0000	9260.0	20.34%	17947.1	24.03%
PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer	NGTGTTCAVTSAAGCGKAAA	1e0	-0.000e+00	1.0000	522.0	1.15%	1381.5	1.85%
Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer	ADBTAATTAR	1e0	-0.000e+00	1.0000	9530.0	20.93%	18780.6	25.14%
Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer	VBSYGTCTGG	1e0	-0.000e+00	1.0000	14103.0	30.97%	25546.2	34.20%
ZNF322(Zf)/HEK293-ZNF322.GFP-ChIP-Seq(GSE58341)/Homer	GAGCCTGGTACTGWGCCTGR	1e0	-0.000e+00	1.0000	2276.0	5.00%	4580.1	6.13%
CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer	ATTGCGCAAC	1e0	-0.000e+00	1.0000	3564.0	7.83%	7605.2	10.18%
PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer	VAGRACAKNCTGTBC	1e0	-0.000e+00	1.0000	18483.0	40.59%	32328.7	43.28%
RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer	AAACCACARM	1e0	-0.000e+00	1.0000	9139.0	20.07%	19034.6	25.48%
Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	5988.0	13.15%	11254.8	15.07%
Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	GATGASTCATCN	1e0	-0.000e+00	1.0000	1627.0	3.57%	4264.0	5.71%
PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer	MGGAAGTGAAAC	1e0	-0.000e+00	1.0000	10375.0	22.78%	22619.3	30.28%
STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer	NATTTCCNGGAAAT	1e0	-0.000e+00	1.0000	1899.0	4.17%	4099.3	5.49%
CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	NTNATGCAAYMNNHTGMAAY	1e0	-0.000e+00	1.0000	744.0	1.63%	1631.4	2.18%
Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer	BTCAAGGTCA	1e0	-0.000e+00	1.0000	4488.0	9.86%	8631.2	11.56%
 Ik-1	NHTTGGGAATRCC	1e0	0.000e+00	1.0000	45537.0	100.00%	74695.6	100.00%
Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer	CTAATKGV	1e0	0.000e+00	1.0000	13200.0	28.99%	24113.7	32.28%
SeqBias: CA-repeat	CACACACACA	1e0	0.000e+00	1.0000	35382.0	77.70%	61451.8	82.27%
NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer	GATGACTCAGCA	1e0	0.000e+00	1.0000	409.0	0.90%	1045.6	1.40%
NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer	GGAAATTCCC	1e0	0.000e+00	1.0000	352.0	0.77%	1102.3	1.48%
Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer	CTTCCGGGAA	1e0	0.000e+00	1.0000	3815.0	8.38%	7465.0	9.99%
Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer	NAHCAGCTGD	1e0	0.000e+00	1.0000	10331.0	22.69%	19997.2	26.77%
REB1/SacCer-Promoters/Homer	KCCGGGTAAYRR	1e0	0.000e+00	1.0000	995.0	2.19%	2417.0	3.24%
STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer	RTTTCTNAGAAA	1e0	0.000e+00	1.0000	2349.0	5.16%	4796.0	6.42%
Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer	TTRAGTGSYK	1e0	0.000e+00	1.0000	16538.0	36.32%	30614.3	40.99%
Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer	DCYAAAAATAGM	1e0	0.000e+00	1.0000	2641.0	5.80%	5868.9	7.86%
HOXB13(Homeobox)/ProstateTumor-HOXB13-ChIP-Seq(GSE56288)/Homer	TTTTATKRGG	1e0	0.000e+00	1.0000	6517.0	14.31%	12826.7	17.17%
PCF/Arabidopsis-Promoters/Homer	NNWWWTGGGCYTDDN	1e0	0.000e+00	1.0000	1358.0	2.98%	2751.3	3.68%
Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer	CCATTGTTNY	1e0	0.000e+00	1.0000	10503.0	23.06%	19125.3	25.60%
RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer	AGGTCAAGGTCA	1e0	0.000e+00	1.0000	476.0	1.05%	1473.4	1.97%
Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer	CTGTCTGG	1e0	0.000e+00	1.0000	13430.0	29.49%	24478.5	32.77%
Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer	CCWTTGTY	1e0	0.000e+00	1.0000	11917.0	26.17%	21610.8	28.93%
STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer	ABTTCYYRRGAA	1e0	0.000e+00	1.0000	3702.0	8.13%	6901.4	9.24%
T1ISRE(IRF)/ThioMac-Ifnb-Expression/Homer	ACTTTCGTTTCT	1e0	0.000e+00	1.0000	67.0	0.15%	257.4	0.34%
Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer	ATGCATAATTCA	1e0	0.000e+00	1.0000	1795.0	3.94%	3698.1	4.95%
MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer	AACAGCTG	1e0	0.000e+00	1.0000	8875.0	19.49%	17557.4	23.51%
RLR1?/SacCer-Promoters/Homer	WTTTTCYYTTTT	1e0	0.000e+00	1.0000	4928.0	10.82%	11132.6	14.90%
E2F6(E2F)/Hela-E2F6-ChIP-Seq(GSE31477)/Homer	GGCGGGAARN	1e0	0.000e+00	1.0000	3503.0	7.69%	7037.4	9.42%
Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer	TAATTAGN	1e0	0.000e+00	1.0000	6311.0	13.86%	12599.1	16.87%
Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer	GKVTCADRTTWC	1e0	0.000e+00	1.0000	1544.0	3.39%	3297.0	4.41%
Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer	TAATCCCN	1e0	0.000e+00	1.0000	26907.0	59.09%	47752.9	63.93%
Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer	RRSCACTYAA	1e0	0.000e+00	1.0000	18345.0	40.29%	31995.1	42.83%
Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer	NRYTTCCGGH	1e0	0.000e+00	1.0000	9187.0	20.17%	22502.1	30.12%
AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer	ATGCCCTGAGGC	1e0	0.000e+00	1.0000	6558.0	14.40%	12326.7	16.50%
CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer	GCTAATCC	1e0	0.000e+00	1.0000	15638.0	34.34%	29102.5	38.96%
Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer	NNNCTTTCCAGGAAA	1e0	0.000e+00	1.0000	10664.0	23.42%	19489.0	26.09%
Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer	TBGCACGCAA	1e0	0.000e+00	1.0000	5357.0	11.76%	10166.4	13.61%
BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer	DATGASTCAT	1e0	0.000e+00	1.0000	4121.0	9.05%	9963.1	13.34%
IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer	GAAAGTGAAAGT	1e0	0.000e+00	1.0000	835.0	1.83%	3383.5	4.53%
Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer	RGCCATTAAC	1e0	0.000e+00	1.0000	27613.0	60.64%	47638.9	63.78%
PU.1:IRF8(ETS:IRF)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	GGAAGTGAAAST	1e0	0.000e+00	1.0000	1406.0	3.09%	4721.7	6.32%
E-box/Drosophila-Promoters/Homer	AACAGCTGTTHN	1e0	0.000e+00	1.0000	1859.0	4.08%	3843.5	5.15%
PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer	ACCRTGACTAATTNN	1e0	0.000e+00	1.0000	993.0	2.18%	2393.3	3.20%
ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer	ACVAGGAAGT	1e0	0.000e+00	1.0000	5692.0	12.50%	15122.0	20.24%
EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer	AVCAGGAAGT	1e0	0.000e+00	1.0000	9813.0	21.55%	23529.5	31.50%
BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer	NHAACBGYYV	1e0	0.000e+00	1.0000	12114.0	26.60%	22330.7	29.90%
Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer	NBWGATAAGR	1e0	0.000e+00	1.0000	6074.0	13.34%	12404.3	16.61%
EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer	VACAGGAAAT	1e0	0.000e+00	1.0000	4883.0	10.72%	12065.9	16.15%
Elk4(ETS)/Hela-Elk4-ChIP-Seq(GSE31477)/Homer	NRYTTCCGGY	1e0	0.000e+00	1.0000	4734.0	10.40%	11890.1	15.92%
GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer	RACCGGAAGT	1e0	0.000e+00	1.0000	7452.0	16.36%	18873.1	25.27%
Lhx1(Homeobox)/EmbryoCarcinoma-Lhx1-ChIP-Seq(GSE70957)/Homer	NNYTAATTAR	1e0	0.000e+00	1.0000	6371.0	13.99%	12479.0	16.71%
Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer	SCTGTCAVTCAV	1e0	0.000e+00	1.0000	1799.0	3.95%	3576.2	4.79%
Dorsal(RHD)/Embryo-dl-ChIP-Seq(GSE65441)/Homer	GGGAAAAMCCCG	1e0	0.000e+00	1.0000	1296.0	2.85%	2971.5	3.98%
Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer	TGCGTGGGYG	1e0	0.000e+00	1.0000	6091.0	13.38%	12061.1	16.15%
ELT-3(Gata)/cElegans-L1-ELT3-ChIP-Seq(modEncode)/Homer	AWTGATAAGA	1e0	0.000e+00	1.0000	2155.0	4.73%	4664.9	6.25%
Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer	GCTATTTTTGGM	1e0	0.000e+00	1.0000	4840.0	10.63%	10494.7	14.05%
CHR(?)/Hela-CellCycle-Expression/Homer	SRGTTTCAAA	1e0	0.000e+00	1.0000	3942.0	8.66%	7780.6	10.42%
Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer	GKTAATGR	1e0	0.000e+00	1.0000	15327.0	33.66%	28541.4	38.21%
HIF2a(bHLH)/785_O-HIF2a-ChIP-Seq(GSE34871)/Homer	GCACGTACCC	1e0	0.000e+00	1.0000	2436.0	5.35%	4723.6	6.32%
X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer	GGTTGCCATGGCAA	1e0	0.000e+00	1.0000	751.0	1.65%	1663.7	2.23%
GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer	AAACYKGTTWDACMRGTTTB	1e0	0.000e+00	1.0000	2700.0	5.93%	5180.4	6.94%
Unknown5/Drosophila-Promoters/Homer	GCTGATAASV	1e0	0.000e+00	1.0000	4020.0	8.83%	7495.6	10.03%
Chop(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer	ATTGCATCAT	1e0	0.000e+00	1.0000	1033.0	2.27%	2271.9	3.04%
c-Jun-CRE(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer	ATGACGTCATCY	1e0	0.000e+00	1.0000	1802.0	3.96%	3978.8	5.33%
LHY(Myb)/Seedling-LHY-ChIP-Seq(GSE52175)/Homer	ADAAATATCT	1e0	0.000e+00	1.0000	5572.0	12.24%	10629.8	14.23%
NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer	WGGGGATTTCCC	1e0	0.000e+00	1.0000	3450.0	7.58%	8117.1	10.87%
E-box/Arabidopsis-Promoters/Homer	GCCACGTG	1e0	0.000e+00	1.0000	3242.0	7.12%	6153.4	8.24%
AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer	SCCTSAGGSCAW	1e0	0.000e+00	1.0000	8715.0	19.14%	16289.2	21.81%
Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer	SVYTTCCNGGAARB	1e0	0.000e+00	1.0000	5730.0	12.58%	10651.0	14.26%
Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer	GCCACACCCA	1e0	0.000e+00	1.0000	3297.0	7.24%	7541.7	10.10%
Sp1(Zf)/Promoter/Homer	GGCCCCGCCCCC	1e0	0.000e+00	1.0000	2371.0	5.21%	5510.9	7.38%
PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer	TGACCTTTGCCCCA	1e0	0.000e+00	1.0000	7310.0	16.05%	14289.3	19.13%
NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber_et_al.)/Homer	GGGGGAATCCCC	1e0	0.000e+00	1.0000	722.0	1.59%	2114.1	2.83%
HIF-1b(HLH)/T47D-HIF1b-ChIP-Seq(GSE59937)/Homer	RTACGTGC	1e0	0.000e+00	1.0000	8615.0	18.92%	16060.7	21.50%
Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer	AGGTGTGAAM	1e0	0.000e+00	1.0000	7693.0	16.89%	15018.5	20.11%
EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer	ATTTCCTGTN	1e0	0.000e+00	1.0000	5481.0	12.04%	13529.5	18.11%
Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer	ATTTGCATAW	1e0	0.000e+00	1.0000	2635.0	5.79%	6642.2	8.89%
Cbf1(bHLH)/Yeast-Cbf1-ChIP-Seq(GSE29506)/Homer	TCACGTGAYH	1e0	0.000e+00	1.0000	1851.0	4.06%	3814.9	5.11%
Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer	RTCACSCCAY	1e0	0.000e+00	1.0000	1428.0	3.14%	2960.5	3.96%
Usf2(bHLH)/C2C12-Usf2-ChIP-Seq(GSE36030)/Homer	GTCACGTGGT	1e0	0.000e+00	1.0000	2390.0	5.25%	4847.8	6.49%
E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer	GGCGGGAAAH	1e0	0.000e+00	1.0000	2998.0	6.58%	5856.3	7.84%
IRF:BATF(IRF:bZIP)/pDC-Irf8-ChIP-Seq(GSE66899)/Homer	CTTTCANTATGACTV	1e0	0.000e+00	1.0000	669.0	1.47%	2122.9	2.84%
Atf1(bZIP)/K562-ATF1-ChIP-Seq(GSE31477)/Homer	GATGACGTCA	1e0	0.000e+00	1.0000	4032.0	8.85%	8543.3	11.44%
FoxL2(Forkhead)/Ovary-FoxL2-ChIP-Seq(GSE60858)/Homer	WWTRTAAACAVG	1e0	0.000e+00	1.0000	5371.0	11.79%	10992.1	14.72%
ETS:RUNX(ETS,Runt)/Jurkat-RUNX1-ChIP-Seq(GSE17954)/Homer	RCAGGATGTGGT	1e0	0.000e+00	1.0000	682.0	1.50%	2241.8	3.00%