Information for 6-AATGGGCAGC (Motif 4)


Reverse Opposite:

p-value:1e-234
log p-value:-5.396e+02
Information Content per bp:1.814
Number of Target Sequences with motif2822.0
Percentage of Target Sequences with motif5.75%
Number of Background Sequences with motif1732.4
Percentage of Background Sequences with motif2.20%
Average Position of motif in Targets193.3 +/- 119.1bp
Average Position of motif in Background220.9 +/- 156.2bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

HIC2/MA0738.1/Jaspar

Match Rank:1
Score:0.67
Offset:0
Orientation:reverse strand
Alignment:AATGGGCAGC
NGTGGGCAT-

THAP1/MA0597.1/Jaspar

Match Rank:2
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AATGGGCAGC
TNNGGGCAG-

PB0133.1_Hic1_2/Jaspar

Match Rank:3
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AATGGGCAGC---
NNNNTTGGGCACNNCN

Unknown3/Drosophila-Promoters/Homer

Match Rank:4
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AATGGGCAGC--
ACVAKCTGGCAGCGC

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.65
Offset:6
Orientation:forward strand
Alignment:AATGGGCAGC-
------CAGCC

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AATGGGCAGC
CAAAGGTCAG-

MSN2/MSN2_H2O2Hi/1-MSN2(Harbison)/Yeast

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AATGGGCAGC
AAGGGGCGG-

abi4/MA0123.1/Jaspar

Match Rank:8
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AATGGGCAGC-
-GGGGGCACCG

SWI5/Literature(Harbison)/Yeast

Match Rank:9
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:AATGGGCAGC-
-----CCAGCA

NtERF2(AP2/EREBP)/Nicotiana tabacum/AthaMap

Match Rank:10
Score:0.61
Offset:4
Orientation:reverse strand
Alignment:AATGGGCAGC-
----GGCGGCG