Information for 5-TGGCAGTA (Motif 3)


Reverse Opposite:

p-value:1e-379
log p-value:-8.737e+02
Information Content per bp:1.819
Number of Target Sequences with motif10103.0
Percentage of Target Sequences with motif20.58%
Number of Background Sequences with motif9348.2
Percentage of Background Sequences with motif11.87%
Average Position of motif in Targets186.5 +/- 105.0bp
Average Position of motif in Background218.3 +/- 166.7bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.10
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

NFIX/MA0671.1/Jaspar

Match Rank:1
Score:0.78
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGTA
NTTGGCANN-

NFIC/MA0161.1/Jaspar

Match Rank:2
Score:0.76
Offset:-1
Orientation:forward strand
Alignment:-TGGCAGTA
TTGGCA---

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:3
Score:0.74
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGTA
CTTGGCAA--

THAP1/MA0597.1/Jaspar

Match Rank:4
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGTA
TNNGGGCAG--

NFIA/MA0670.1/Jaspar

Match Rank:5
Score:0.74
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGTA
NNTTGGCANN-

Hic1/MA0739.1/Jaspar

Match Rank:6
Score:0.73
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGTA
GGTTGGCAT--

HIC2/MA0738.1/Jaspar

Match Rank:7
Score:0.70
Offset:-3
Orientation:reverse strand
Alignment:---TGGCAGTA
NGTGGGCAT--

RIM101/Literature(Harbison)/Yeast

Match Rank:8
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGTA
CTTGGCA---

RIM101(MacIsaac)/Yeast

Match Rank:9
Score:0.69
Offset:-2
Orientation:reverse strand
Alignment:--TGGCAGTA
CTTGGCA---

brk/dmmpmm(Bergman)/fly

Match Rank:10
Score:0.69
Offset:0
Orientation:forward strand
Alignment:TGGCAGTA
TGGCGCT-