Information for 24-GTAGTAGGAGDA (Motif 21)


Reverse Opposite:

p-value:1e-4
log p-value:-1.029e+01
Information Content per bp:1.738
Number of Target Sequences with motif25.0
Percentage of Target Sequences with motif0.05%
Number of Background Sequences with motif9.3
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets130.7 +/- 94.0bp
Average Position of motif in Background131.3 +/- 119.7bp
Strand Bias (log2 ratio + to - strand density)2.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SMZ/MA0553.1/Jaspar

Match Rank:1
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:GTAGTAGGAGDA
---GTACGAGG-

ZmHOX2a(1)(HD-HOX)/Zea mays/AthaMap

Match Rank:2
Score:0.53
Offset:6
Orientation:reverse strand
Alignment:GTAGTAGGAGDA-
------TTAGGAC

ems/dmmpmm(Papatsenko)/fly

Match Rank:3
Score:0.53
Offset:2
Orientation:forward strand
Alignment:GTAGTAGGAGDA-
--ACGATTATGAC

MZF1(var.2)/MA0057.1/Jaspar

Match Rank:4
Score:0.52
Offset:3
Orientation:forward strand
Alignment:GTAGTAGGAGDA-
---GGAGGGGGAA

br(var.2)/MA0011.1/Jaspar

Match Rank:5
Score:0.52
Offset:1
Orientation:reverse strand
Alignment:GTAGTAGGAGDA
-AAATAGTA---

br-Z2/dmmpmm(SeSiMCMC)/fly

Match Rank:6
Score:0.51
Offset:1
Orientation:forward strand
Alignment:GTAGTAGGAGDA
-TAGTAA-----

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:7
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:GTAGTAGGAGDA
GTAATCDGATTA

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.51
Offset:5
Orientation:reverse strand
Alignment:GTAGTAGGAGDA---
-----GGGAGGACNG

SMP1/Literature(Harbison)/Yeast

Match Rank:9
Score:0.51
Offset:-6
Orientation:reverse strand
Alignment:------GTAGTAGGAGDA
CTAAAAATAGTAGT----

SMP1(MacIsaac)/Yeast

Match Rank:10
Score:0.51
Offset:-6
Orientation:reverse strand
Alignment:------GTAGTAGGAGDA
CTAAAAATAGTAGT----