Information for 22-TTCGCTTTGCTT (Motif 20)


Reverse Opposite:

p-value:1e-5
log p-value:-1.214e+01
Information Content per bp:1.796
Number of Target Sequences with motif68.0
Percentage of Target Sequences with motif0.14%
Number of Background Sequences with motif47.2
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets190.1 +/- 135.2bp
Average Position of motif in Background291.2 +/- 169.3bp
Strand Bias (log2 ratio + to - strand density)1.1
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

MAC1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.61
Offset:5
Orientation:reverse strand
Alignment:TTCGCTTTGCTT
-----TTTGCTC

MAC1/MA0326.1/Jaspar

Match Rank:2
Score:0.58
Offset:5
Orientation:forward strand
Alignment:TTCGCTTTGCTT-
-----TTTGCTCA

Dof3/MA0021.1/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TTCGCTTTGCTT
--CGCTTT----

pan/dmmpmm(Papatsenko)/fly

Match Rank:4
Score:0.58
Offset:4
Orientation:forward strand
Alignment:TTCGCTTTGCTT
----CTTTGAT-

MNB1A/MA0053.1/Jaspar

Match Rank:5
Score:0.58
Offset:3
Orientation:reverse strand
Alignment:TTCGCTTTGCTT
---GCTTT----

DOF2(C2C2(Zn) Dof)/Zea mays/AthaMap

Match Rank:6
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:TTCGCTTTGCTT
-NNGCTTTANNN

PBF/MA0064.1/Jaspar

Match Rank:7
Score:0.57
Offset:3
Orientation:reverse strand
Alignment:TTCGCTTTGCTT
---GCTTT----

Dof2/MA0020.1/Jaspar

Match Rank:8
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TTCGCTTTGCTT
--NGCTTT----

PB0037.1_Isgf3g_1/Jaspar

Match Rank:9
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:TTCGCTTTGCTT---
TNAGTTTCGATTTTN

IRF2/MA0051.1/Jaspar

Match Rank:10
Score:0.57
Offset:-8
Orientation:reverse strand
Alignment:--------TTCGCTTTGCTT
GTTTTGCTTTCACTTTCC--