Information for 21-CTCCCTMTCCCT (Motif 19)


Reverse Opposite:

p-value:1e-5
log p-value:-1.263e+01
Information Content per bp:1.636
Number of Target Sequences with motif151.0
Percentage of Target Sequences with motif0.31%
Number of Background Sequences with motif142.9
Percentage of Background Sequences with motif0.18%
Average Position of motif in Targets183.3 +/- 140.3bp
Average Position of motif in Background213.2 +/- 175.9bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)2.31
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

SeqBias: GA-repeat

Match Rank:1
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTCCCTMTCCCT
TCTCTCTCTC---

Trl/dmmpmm(Down)/fly

Match Rank:2
Score:0.62
Offset:-3
Orientation:reverse strand
Alignment:---CTCCCTMTCCCT
GCTCTCTCTCTC---

POL013.1_MED-1/Jaspar

Match Rank:3
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTCCCTMTCCCT
GCTCCG-------

Trl/dmmpmm(Bigfoot)/fly

Match Rank:4
Score:0.60
Offset:-5
Orientation:forward strand
Alignment:-----CTCCCTMTCCCT
TTNCTCTCTCTCT----

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.59
Offset:-5
Orientation:forward strand
Alignment:-----CTCCCTMTCCCT
CNGTCCTCCC-------

Trl/dmmpmm(Pollard)/fly

Match Rank:6
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CTCCCTMTCCCT
TTGCTCTCTC-----

Trl/MA0205.1/Jaspar

Match Rank:7
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CTCCCTMTCCCT
TTGCTCTCTC-----

ADR1/Literature(Harbison)/Yeast

Match Rank:8
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTCCCTMTCCCT
ACCCCN-------

ADR1(MacIsaac)/Yeast

Match Rank:9
Score:0.58
Offset:-1
Orientation:reverse strand
Alignment:-CTCCCTMTCCCT
ACCCCN-------

GAGA-repeat/SacCer-Promoters/Homer

Match Rank:10
Score:0.57
Offset:0
Orientation:forward strand
Alignment:CTCCCTMTCCCT---
CTYTCTYTCTCTCTC