Information for 20-AAGGAAGGAACG (Motif 17)


Reverse Opposite:

p-value:1e-6
log p-value:-1.492e+01
Information Content per bp:1.780
Number of Target Sequences with motif513.0
Percentage of Target Sequences with motif1.05%
Number of Background Sequences with motif610.4
Percentage of Background Sequences with motif0.77%
Average Position of motif in Targets215.9 +/- 139.5bp
Average Position of motif in Background248.0 +/- 167.8bp
Strand Bias (log2 ratio + to - strand density)-0.1
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

EWSR1-FLI1/MA0149.1/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--AAGGAAGGAACG----
GGAAGGAAGGAAGGAAGG

GCR2/MA0305.1/Jaspar

Match Rank:2
Score:0.71
Offset:1
Orientation:reverse strand
Alignment:AAGGAAGGAACG
-NGGAAGC----

GCR2(MacIsaac)/Yeast

Match Rank:3
Score:0.69
Offset:1
Orientation:reverse strand
Alignment:AAGGAAGGAACG
-NGGAAGC----

PB0012.1_Elf3_1/Jaspar

Match Rank:4
Score:0.68
Offset:-3
Orientation:forward strand
Alignment:---AAGGAAGGAACG
AACAAGGAAGTAA--

SFL1/MA0377.1/Jaspar

Match Rank:5
Score:0.66
Offset:-6
Orientation:forward strand
Alignment:------AAGGAAGGAACG---
TAGAGAATAGAAGAAATAAAA

E2F6/MA0471.1/Jaspar

Match Rank:6
Score:0.64
Offset:1
Orientation:forward strand
Alignment:AAGGAAGGAACG
-GGGCGGGAAGG

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:7
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAGGAAGGAACG
AVCAGGAAGT----

Eip74EF/dmmpmm(SeSiMCMC)/fly

Match Rank:8
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:AAGGAAGGAACG
-AGGAAGTAT--

Etv2(ETS)/ES-ER71-ChIP-Seq(GSE59402)/Homer(0.967)

Match Rank:9
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AAGGAAGGAACG
NDCAGGAARTNN--

POL008.1_DCE_S_I/Jaspar

Match Rank:10
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:AAGGAAGGAACG
--NGAAGC----