Information for 1-GCGCCMYCTDSW (Motif 1)


Reverse Opposite:

p-value:1e-5431
log p-value:-1.251e+04
Information Content per bp:1.499
Number of Target Sequences with motif25349.0
Percentage of Target Sequences with motif51.64%
Number of Background Sequences with motif8921.2
Percentage of Background Sequences with motif11.32%
Average Position of motif in Targets182.4 +/- 85.0bp
Average Position of motif in Background206.6 +/- 131.9bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.08
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

CTCF/MA0531.1/Jaspar

Match Rank:1
Score:0.84
Offset:-1
Orientation:reverse strand
Alignment:-GCGCCMYCTDSW--
GGCGCCATCTAGCGG

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.81
Offset:-5
Orientation:forward strand
Alignment:-----GCGCCMYCTDSW---
CNNBRGCGCCCCCTGSTGGC

CTCF/MA0139.1/Jaspar

Match Rank:3
Score:0.79
Offset:-2
Orientation:reverse strand
Alignment:--GCGCCMYCTDSW-----
TAGCGCCCCCTGGTGGCCA

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:4
Score:0.77
Offset:-3
Orientation:forward strand
Alignment:---GCGCCMYCTDSW-----
ANAGTGCCACCTGGTGGCCA

PB0076.1_Sp4_1/Jaspar

Match Rank:5
Score:0.74
Offset:-4
Orientation:forward strand
Alignment:----GCGCCMYCTDSW-
GGTCCCGCCCCCTTCTC

RPN4/MA0373.1/Jaspar

Match Rank:6
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:GCGCCMYCTDSW
-CGCCACC----

btd/MA0443.1/Jaspar

Match Rank:7
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-GCGCCMYCTDSW
TCCGCCCCCT---

INSM1/MA0155.1/Jaspar

Match Rank:8
Score:0.70
Offset:1
Orientation:reverse strand
Alignment:GCGCCMYCTDSW-
-CGCCCCCTGACA

RAP2-10/MA0980.1/Jaspar

Match Rank:9
Score:0.70
Offset:0
Orientation:forward strand
Alignment:GCGCCMYCTDSW
GCGCCGCC----

ADR1/Literature(Harbison)/Yeast

Match Rank:10
Score:0.69
Offset:3
Orientation:reverse strand
Alignment:GCGCCMYCTDSW
---ACCCCN---