Information for 6-AACAATGC (Motif 6)


Reverse Opposite:

p-value:1e-22
log p-value:-5.148e+01
Information Content per bp:1.590
Number of Target Sequences with motif6817.0
Percentage of Target Sequences with motif29.91%
Number of Background Sequences with motif22527.3
Percentage of Background Sequences with motif26.62%
Average Position of motif in Targets196.8 +/- 130.1bp
Average Position of motif in Background228.4 +/- 167.0bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.18
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

ROX1/Literature(Harbison)/Yeast

Match Rank:1
Score:0.89
Offset:0
Orientation:reverse strand
Alignment:AACAATGC-
AACAATACA

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:2
Score:0.86
Offset:-2
Orientation:reverse strand
Alignment:--AACAATGC
VRRACAAWGG

Sox5/MA0087.1/Jaspar

Match Rank:3
Score:0.86
Offset:-1
Orientation:reverse strand
Alignment:-AACAATGC
NAACAAT--

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:4
Score:0.84
Offset:-2
Orientation:reverse strand
Alignment:--AACAATGC
RNAACAATGG

Sox6/MA0515.1/Jaspar

Match Rank:5
Score:0.83
Offset:-2
Orientation:reverse strand
Alignment:--AACAATGC
AAAACAATGG

MF0011.1_HMG_class/Jaspar

Match Rank:6
Score:0.83
Offset:0
Orientation:reverse strand
Alignment:AACAATGC
AACAAT--

SOX9/MA0077.1/Jaspar

Match Rank:7
Score:0.83
Offset:-1
Orientation:reverse strand
Alignment:-AACAATGC
GAACAATGG

SOX10/MA0442.1/Jaspar

Match Rank:8
Score:0.82
Offset:1
Orientation:reverse strand
Alignment:AACAATGC
-ACAAAG-

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:9
Score:0.82
Offset:-1
Orientation:forward strand
Alignment:-AACAATGC-
RAACAATGGN

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.82
Offset:-1
Orientation:reverse strand
Alignment:-AACAATGC-
GAACAATGGN