Information for 9-GAGAGCGCCGCC (Motif 5)


Reverse Opposite:

p-value:1e-31
log p-value:-7.270e+01
Information Content per bp:1.605
Number of Target Sequences with motif3090.0
Percentage of Target Sequences with motif13.56%
Number of Background Sequences with motif9070.9
Percentage of Background Sequences with motif10.72%
Average Position of motif in Targets236.6 +/- 149.1bp
Average Position of motif in Background224.5 +/- 121.9bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.42
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

RAP2-10/MA0980.1/Jaspar

Match Rank:1
Score:0.83
Offset:4
Orientation:forward strand
Alignment:GAGAGCGCCGCC
----GCGCCGCC

RAP2-6/MA1052.1/Jaspar

Match Rank:2
Score:0.82
Offset:4
Orientation:forward strand
Alignment:GAGAGCGCCGCC
----GCGCCGCC

ERF109/MA1053.1/Jaspar

Match Rank:3
Score:0.81
Offset:4
Orientation:forward strand
Alignment:GAGAGCGCCGCC
----GCGCCGCC

CRF4/MA0976.1/Jaspar

Match Rank:4
Score:0.79
Offset:4
Orientation:forward strand
Alignment:GAGAGCGCCGCC
----GCGCCGCC

RAP2-3/MA1051.1/Jaspar

Match Rank:5
Score:0.79
Offset:4
Orientation:forward strand
Alignment:GAGAGCGCCGCC
----GCGCCGCC

CRF2/MA0975.1/Jaspar

Match Rank:6
Score:0.76
Offset:4
Orientation:forward strand
Alignment:GAGAGCGCCGCC
----CCGCCGCC

Os05g0497200/MA1034.1/Jaspar

Match Rank:7
Score:0.73
Offset:5
Orientation:forward strand
Alignment:GAGAGCGCCGCC-
-----CGCCGCCA

SNT2(MacIsaac)/Yeast

Match Rank:8
Score:0.72
Offset:-2
Orientation:forward strand
Alignment:--GAGAGCGCCGCC-
ATGATAGCGCCGCNC

ERF4/MA0992.1/Jaspar

Match Rank:9
Score:0.71
Offset:4
Orientation:forward strand
Alignment:GAGAGCGCCGCC
----CCGCCGCC

NtERF2(AP2/EREBP)/Nicotiana tabacum/AthaMap

Match Rank:10
Score:0.71
Offset:5
Orientation:forward strand
Alignment:GAGAGCGCCGCC
-----CGCCGCC