Information for 5-AGCACCAT (Motif 3)


Reverse Opposite:

p-value:1e-34
log p-value:-7.906e+01
Information Content per bp:1.818
Number of Target Sequences with motif2581.0
Percentage of Target Sequences with motif11.33%
Number of Background Sequences with motif7286.9
Percentage of Background Sequences with motif8.61%
Average Position of motif in Targets188.6 +/- 123.6bp
Average Position of motif in Background222.7 +/- 163.7bp
Strand Bias (log2 ratio + to - strand density)0.1
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

brk/dmmpmm(Bergman)/fly

Match Rank:1
Score:0.72
Offset:0
Orientation:reverse strand
Alignment:AGCACCAT
AGCGCCA-

HMRA1/MA0327.1/Jaspar

Match Rank:2
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGCACCAT
-ACACAAT

MATA1(MacIsaac)/Yeast

Match Rank:3
Score:0.68
Offset:1
Orientation:forward strand
Alignment:AGCACCAT
-ACACAAT

AFT2/AFT2_H2O2Lo/10-RCS1[~AFT2](Harbison)/Yeast

Match Rank:4
Score:0.67
Offset:1
Orientation:reverse strand
Alignment:AGCACCAT
-GCACCC-

ABI4(2)(AP2/EREBP)/Zea mays/AthaMap

Match Rank:5
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---AGCACCAT
GGNNGCACCG-

CTCF/MA0531.1/Jaspar

Match Rank:6
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AGCACCAT-------
GGCGCCATCTAGCGG

RCS1(MacIsaac)/Yeast

Match Rank:7
Score:0.64
Offset:0
Orientation:forward strand
Alignment:AGCACCAT
TGCACCC-

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:8
Score:0.64
Offset:-6
Orientation:forward strand
Alignment:------AGCACCAT---
CATAAGACCACCATTAC

AFT2(MacIsaac)/Yeast

Match Rank:9
Score:0.63
Offset:0
Orientation:forward strand
Alignment:AGCACCAT
TGCACCC-

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:10
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----AGCACCAT--
ADGGYAGYAGCATCT