Information for 19-CTCCTTCSYT (Motif 25)


Reverse Opposite:

p-value:1e-6
log p-value:-1.512e+01
Information Content per bp:1.694
Number of Target Sequences with motif2975.0
Percentage of Target Sequences with motif13.05%
Number of Background Sequences with motif10005.0
Percentage of Background Sequences with motif11.82%
Average Position of motif in Targets208.5 +/- 138.8bp
Average Position of motif in Background232.7 +/- 163.0bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

POL008.1_DCE_S_I/Jaspar

Match Rank:1
Score:0.70
Offset:2
Orientation:forward strand
Alignment:CTCCTTCSYT
--GCTTCC--

GCR2/MA0305.1/Jaspar

Match Rank:2
Score:0.68
Offset:2
Orientation:forward strand
Alignment:CTCCTTCSYT
--GCTTCCT-

GCR2(MacIsaac)/Yeast

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CTCCTTCSYT
--GCTTCCN-

MSN4(MacIsaac)/Yeast

Match Rank:4
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTTCSYT
CCCCCTT----

ttk/dmmpmm(Papatsenko)/fly

Match Rank:5
Score:0.64
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTTCSYT
GGTCCTGCC--

Eip74EF/dmmpmm(Bigfoot)/fly

Match Rank:6
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTCCTTCSYT
--ACTTCCTG

Unknown4/Arabidopsis-Promoters/Homer

Match Rank:7
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CTCCTTCSYT
CKTCKTCTTY

MSN4/Literature(Harbison)/Yeast

Match Rank:8
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTTCSYT
NCCCCTG----

ttk/dmmpmm(SeSiMCMC)/fly

Match Rank:9
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTCCTTCSYT
GGTCCTGC---

EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer

Match Rank:10
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:CTCCTTCSYT--
--ACTTCCTGBT