Information for 18-AGCACAGCAC (Motif 24)


Reverse Opposite:

p-value:1e-6
log p-value:-1.560e+01
Information Content per bp:1.930
Number of Target Sequences with motif173.0
Percentage of Target Sequences with motif0.76%
Number of Background Sequences with motif396.5
Percentage of Background Sequences with motif0.47%
Average Position of motif in Targets186.9 +/- 119.2bp
Average Position of motif in Background227.5 +/- 172.5bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.21
Motif File:file (matrix)
reverse opposite
PDF Format Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0207.1_Zic3_2/Jaspar

Match Rank:1
Score:0.66
Offset:-1
Orientation:forward strand
Alignment:-AGCACAGCAC----
GAGCACAGCAGGACA

PB0208.1_Zscan4_2/Jaspar

Match Rank:2
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AGCACAGCAC---
CGAAGCACACAAAATA

RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--AGCACAGCAC
AAACCACAGC--

PB0091.1_Zbtb3_1/Jaspar

Match Rank:4
Score:0.63
Offset:-3
Orientation:forward strand
Alignment:---AGCACAGCAC----
AATCGCACTGCATTCCG

MAC1/MA0326.1/Jaspar

Match Rank:5
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--AGCACAGCAC
TGAGCAAA----

PHO2/PHO2_H2O2Hi/[](Harbison)/Yeast

Match Rank:6
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:AGCACAGCAC-
CGCACCGCACG

PB0205.1_Zic1_2/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGCACAGCAC----
CCACACAGCAGGAGA

Gfi1b/MA0483.1/Jaspar

Match Rank:8
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AGCACAGCAC
AAATCACAGCA-

POL009.1_DCE_S_II/Jaspar

Match Rank:9
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:AGCACAGCAC
--CACAGN--

MAC1/Literature(Harbison)/Yeast

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AGCACAGCAC
GAGCAAA----